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pyhrf.boldsynth package
Subpackages
pyhrf.boldsynth.pottsfield package
Submodules
pyhrf.boldsynth.pottsfield.swendsenwang module
Submodules
pyhrf.boldsynth.field module
pyhrf.boldsynth.hrf module
pyhrf.boldsynth.scenarios module
pyhrf.boldsynth.spatialconfig module
pyhrf.jde package
Subpackages
pyhrf.jde.nrl package
Submodules
pyhrf.jde.nrl.ar module
pyhrf.jde.nrl.base module
pyhrf.jde.nrl.bigaussian module
pyhrf.jde.nrl.bigaussian_drift module
pyhrf.jde.nrl.gammagaussian module
pyhrf.jde.nrl.habituation module
pyhrf.jde.nrl.trigaussian module
Submodules
pyhrf.jde.asl module
pyhrf.jde.asl_2steps module
pyhrf.jde.asl_physio module
pyhrf.jde.asl_physio_1step module
pyhrf.jde.asl_physio_1step_params module
pyhrf.jde.asl_physio_det_fwdm module
pyhrf.jde.asl_physio_hierarchical module
pyhrf.jde.asl_physio_joint module
pyhrf.jde.beta module
pyhrf.jde.drift module
pyhrf.jde.hrf module
pyhrf.jde.jde_multi_sess module
pyhrf.jde.jde_multi_sujets module
pyhrf.jde.jde_multi_sujets_alpha module
pyhrf.jde.models module
pyhrf.jde.noise module
pyhrf.jde.samplerbase module
pyhrf.jde.wsampler module
pyhrf.sandbox package
Submodules
pyhrf.sandbox.data_parser module
pyhrf.sandbox.func_BMA_consensus_clustering module
pyhrf.sandbox.make_parcellation module
pyhrf.sandbox.parcellation module
pyhrf.sandbox.physio module
pyhrf.sandbox.physio_params module
pyhrf.sandbox.stats module
pyhrf.stats package
Submodules
pyhrf.stats.misc module
pyhrf.stats.random module
pyhrf.test package
Submodules
pyhrf.test.analysertest module
pyhrf.test.boldsynthTest module
pyhrf.test.commandTest module
pyhrf.test.core_test module
pyhrf.test.graphtest module
pyhrf.test.iotest module
pyhrf.test.jdetest module
pyhrf.test.rfir_test module
pyhrf.test.seppotest module
pyhrf.test.statsTest module
pyhrf.test.test module
pyhrf.test.test_glm module
pyhrf.test.test_jde_multi_subj module
pyhrf.test.test_jde_vem_asl module
pyhrf.test.test_jde_vem_bold module
pyhrf.test.test_jde_vem_tools module
pyhrf.test.test_jde_vem_tools_UtilsC module
pyhrf.test.test_jde_vem_tools_asl module
pyhrf.test.test_ndarray module
pyhrf.test.test_paradigm module
pyhrf.test.test_parallel module
pyhrf.test.test_parcellation module
pyhrf.test.test_plot module
pyhrf.test.test_rfir module
pyhrf.test.test_sampler module
pyhrf.test.test_sandbox_physio module
pyhrf.test.test_treatment module
pyhrf.test.test_xml module
pyhrf.test.toolsTest module
pyhrf.tools package
Submodules
pyhrf.tools.aexpression module
pyhrf.tools.backports module
pyhrf.tools.cpus module
pyhrf.tools.message module
pyhrf.tools.misc module
pyhrf.ui package
Submodules
pyhrf.ui.analyser_ui module
pyhrf.ui.glm_analyser module
pyhrf.ui.glm_ui module
pyhrf.ui.jde module
pyhrf.ui.rfir_ui module
pyhrf.ui.treatment module
pyhrf.ui.vb_jde_analyser module
pyhrf.ui.vb_jde_analyser_asl_fast module
pyhrf.ui.vb_jde_analyser_bold_fast module
pyhrf.validation package
Submodules
pyhrf.validation.config module
pyhrf.validation.valid_beta_estim module
pyhrf.validation.valid_jde_asl module
pyhrf.validation.valid_jde_asl_physio module
pyhrf.validation.valid_jde_asl_physio_alpha module
pyhrf.validation.valid_jde_bold_mono_subj_multi_sess module
pyhrf.validation.valid_jde_bold_mono_subj_sess module
pyhrf.validation.valid_jde_vem_asl module
pyhrf.validation.valid_rfir module
pyhrf.validation.valid_rndm_field module
pyhrf.validation.valid_sandbox_parcellation module
pyhrf.vbjde package
Submodules
pyhrf.vbjde.vem_asl_models_fast module
pyhrf.vbjde.vem_asl_models_fast_ms module
pyhrf.vbjde.vem_bold module
pyhrf.vbjde.vem_bold_constrained module
pyhrf.vbjde.vem_bold_models_fast module
pyhrf.vbjde.vem_bold_models_fast_ms module
pyhrf.vbjde.vem_tools module
pyhrf.xmliobak package
Submodules
pyhrf.xmliobak.xmlbase module
pyhrf.xmliobak.xmlmatlab module
pyhrf.xmliobak.xmlnumpy module
pyhrf.configuration module
pyhrf.core module
pyhrf.glm module
pyhrf.graph module
pyhrf.grid module
pyhrf.ndarray module
pyhrf.paradigm module
pyhrf.parallel module
pyhrf.parcellation module
pyhrf.plot module
pyhrf.rfir module
pyhrf.surface module
pyhrf.usemode module
pyhrf.version module
pyhrf.xmlio module
Index
A
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B
|
C
|
D
|
E
|
F
|
G
|
H
|
I
|
J
|
K
|
L
|
M
|
N
|
O
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P
|
Q
|
R
|
S
|
T
|
U
|
V
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W
|
X
|
Z
A
A (class in pyhrf.test.test_xml)
A_Entropy() (in module pyhrf.vbjde.vem_tools)
abnormal_stop() (pyhrf.grid.OneTaskManager method)
(pyhrf.grid.RepeatedTasksManager method)
(pyhrf.grid.TasksManager method)
acorr() (in module pyhrf.stats.misc)
action() (pyhrf.parcellation.Ant method)
add() (pyhrf.ndarray.xndarray method)
add_child() (pyhrf.xmlio.UiNode method)
add_prefix() (in module pyhrf.tools.misc)
add_root() (pyhrf.tools.misc.Pipeline method)
add_suffix() (in module pyhrf.tools.misc)
addDefaultFunctions() (pyhrf.tools.aexpression.ArithmeticExpression method)
addDefaultVariables() (pyhrf.tools.aexpression.ArithmeticExpression method)
AgglomerationTransform (class in pyhrf.sandbox.parcellation)
align_parcellation() (in module pyhrf.sandbox.parcellation)
Alpha_hgroup_Sampler (class in pyhrf.jde.jde_multi_sujets_alpha)
AlphaVar_Sampler (class in pyhrf.jde.jde_multi_sujets_alpha)
already_done() (pyhrf.ui.treatment.FMRITreatment method)
analyse() (pyhrf.ui.analyser_ui.FMRIAnalyser method)
analyse_roi() (pyhrf.ui.analyser_ui.FMRIAnalyser method)
(pyhrf.ui.glm_analyser.GLMAnalyser method)
(pyhrf.ui.glm_ui.GLMAnalyser method)
(pyhrf.ui.jde.JDEMCMCAnalyser method)
(pyhrf.ui.rfir_ui.RFIRAnalyser method)
(pyhrf.ui.vb_jde_analyser.JDEVEMAnalyser method)
(pyhrf.ui.vb_jde_analyser_asl_fast.JDEVEMAnalyser method)
(pyhrf.ui.vb_jde_analyser_bold_fast.JDEVEMAnalyser method)
analyse_roi_wrap() (pyhrf.ui.analyser_ui.FMRIAnalyser method)
analyse_roi_wrap_bak() (pyhrf.ui.analyser_ui.FMRIAnalyser method)
AnsiColorizer (class in pyhrf.tools.misc)
Ant (class in pyhrf.parcellation)
append() (pyhrf.grid.TaskList method)
append_common_treatment_options() (in module pyhrf.ui.treatment)
appendParametersToDOMTree() (pyhrf.xmliobak.xmlbase.XMLParamDrivenClass method)
apply_to_dict() (in module pyhrf.sandbox.data_parser)
apply_to_leaves() (in module pyhrf.tools.misc)
ArithmeticExpression (class in pyhrf.tools.aexpression)
ArithmeticExpressionNameError
ArithmeticExpressionSyntaxError
ARN_BiG_BOLDSamplerInput (class in pyhrf.jde.models)
array_summary() (in module pyhrf.tools.misc)
arrayDOMWriter() (pyhrf.xmliobak.xmlbase.TypedXMLHandler static method)
(pyhrf.xmliobak.xmlnumpy.NumpyXMLHandler static method)
ArrayMappingError
arrayTagDOMReader() (pyhrf.xmliobak.xmlbase.TypedXMLHandler static method)
(pyhrf.xmliobak.xmlnumpy.NumpyXMLHandler static method)
ASLPhysioHierarchicalTest (class in pyhrf.validation.valid_jde_asl_physio)
ASLPhysioSampler (class in pyhrf.jde.asl_physio)
(class in pyhrf.jde.asl_physio_1step)
(class in pyhrf.jde.asl_physio_1step_params)
(class in pyhrf.jde.asl_physio_det_fwdm)
(class in pyhrf.jde.asl_physio_hierarchical)
(class in pyhrf.jde.asl_physio_joint)
ASLPhysioTest (class in pyhrf.test.jdetest)
ASLSampler (class in pyhrf.jde.asl)
ASLTest (class in pyhrf.test.jdetest)
(class in pyhrf.validation.valid_jde_asl)
(class in pyhrf.validation.valid_jde_asl_physio)
(class in pyhrf.validation.valid_jde_asl_physio_alpha)
(class in pyhrf.validation.valid_jde_vem_asl)
assert_file_exists() (in module pyhrf.tools.misc)
(pyhrf.test.iotest.RxCopyTest method)
assert_html_equal() (pyhrf.test.test_ndarray.TestHtml method)
assert_is_initialized() (pyhrf.xmlio.Initable method)
assert_parcellation_equal() (in module pyhrf.sandbox.parcellation)
assert_path_not_in_src() (in module pyhrf.tools.misc)
astype() (pyhrf.ndarray.xndarray method)
AttrClass (class in pyhrf.core)
ATTRIBUTE_LABEL_META (pyhrf.xmliobak.xmlbase.TypedXMLHandler attribute)
ATTRIBUTE_LABEL_PYTHON_CLASS (pyhrf.xmliobak.xmlbase.TypedXMLHandler attribute)
ATTRIBUTE_LABEL_PYTHON_CLASS_INIT_MODE (pyhrf.xmliobak.xmlbase.TypedXMLHandler attribute)
ATTRIBUTE_LABEL_PYTHON_FUNCTION (pyhrf.xmliobak.xmlbase.TypedXMLHandler attribute)
ATTRIBUTE_LABEL_PYTHON_MODULE (pyhrf.xmliobak.xmlbase.TypedXMLHandler attribute)
ATTRIBUTE_LABEL_TYPE (pyhrf.xmliobak.xmlbase.TypedXMLHandler attribute)
attrs_to_string() (in module pyhrf.tools.misc)
autocrop() (in module pyhrf.plot)
available_cpu_count() (in module pyhrf.tools.cpus)
available_status (pyhrf.grid.HostsManager attribute)
average() (pyhrf.core.FmriData method)
B
B (class in pyhrf.test.test_xml)
b() (in module pyhrf.jde.asl)
(in module pyhrf.jde.asl_physio)
(in module pyhrf.jde.asl_physio_1step)
(in module pyhrf.jde.asl_physio_1step_params)
(in module pyhrf.jde.asl_physio_det_fwdm)
(in module pyhrf.jde.asl_physio_hierarchical)
(in module pyhrf.jde.asl_physio_joint)
(in module pyhrf.jde.jde_multi_sess)
(in module pyhrf.jde.jde_multi_sujets)
(in module pyhrf.jde.jde_multi_sujets_alpha)
balanced() (pyhrf.parcellation.World method)
BaseEstimator (class in pyhrf.sandbox.parcellation)
BaseTest (class in pyhrf.test.test_xml)
BEGINC (pyhrf.tools.misc.AnsiColorizer attribute)
beta_estim_obs_field() (in module pyhrf.jde.beta)
beta_estim_obs_field_mc() (in module pyhrf.validation.valid_beta_estim)
beta_gradient() (in module pyhrf.vbjde.vem_tools)
beta_maximization() (in module pyhrf.vbjde.vem_tools)
BetaEstimESTest (class in pyhrf.test.analysertest)
BetaGenerator (class in pyhrf.stats.random)
BetaSampler (class in pyhrf.jde.beta)
bezierCurve() (in module pyhrf.boldsynth.hrf)
bfs_set_label() (in module pyhrf.graph)
bfs_sub_graph() (in module pyhrf.graph)
BiGaussMixtureParams_Multi_Sess_NRLsBar_Sampler (class in pyhrf.jde.jde_multi_sess)
(class in pyhrf.jde.nrl.bigaussian_drift)
BiGaussMixtureParamsSampler (class in pyhrf.jde.jde_multi_sujets_alpha)
(class in pyhrf.jde.nrl.bigaussian)
BiGaussMixtureParamsSamplerWithRelVar (class in pyhrf.jde.nrl.bigaussian)
BiGaussMixtureParamsSamplerWithRelVar_OLD (class in pyhrf.jde.nrl.bigaussian)
BMA_consensus_cluster_parallel() (in module pyhrf.sandbox.func_BMA_consensus_clustering)
bold (pyhrf.core.FmriData attribute)
BOLDGibbs_Multi_SessSampler (class in pyhrf.jde.jde_multi_sess)
BOLDGibbs_Multi_SubjSampler (class in pyhrf.jde.jde_multi_sujets)
(class in pyhrf.jde.jde_multi_sujets_alpha)
BOLDGibbsSampler (class in pyhrf.jde.models)
BOLDGibbsSampler_AR (class in pyhrf.jde.models)
BOLDMixtureSampler (class in pyhrf.jde.asl)
(class in pyhrf.jde.asl_physio)
(class in pyhrf.jde.asl_physio_1step)
(class in pyhrf.jde.asl_physio_1step_params)
(class in pyhrf.jde.asl_physio_det_fwdm)
(class in pyhrf.jde.asl_physio_hierarchical)
(class in pyhrf.jde.asl_physio_joint)
BOLDResponseLevelSampler (class in pyhrf.jde.asl)
(class in pyhrf.jde.asl_physio)
(class in pyhrf.jde.asl_physio_1step)
(class in pyhrf.jde.asl_physio_1step_params)
(class in pyhrf.jde.asl_physio_det_fwdm)
(class in pyhrf.jde.asl_physio_hierarchical)
(class in pyhrf.jde.asl_physio_joint)
BOLDResponseSampler (class in pyhrf.jde.asl)
BOLDResponseVarianceSampler (class in pyhrf.jde.asl)
BOLDSampler_Multi_SessInput (class in pyhrf.jde.jde_multi_sess)
(class in pyhrf.jde.models)
BOLDSampler_MultiSujInput (class in pyhrf.jde.jde_multi_sujets)
(class in pyhrf.jde.jde_multi_sujets_alpha)
BOLDSamplerInput (class in pyhrf.jde.models)
boolDOMWriter() (pyhrf.xmliobak.xmlbase.TypedXMLHandler static method)
boolTagDOMReader() (pyhrf.xmliobak.xmlbase.TypedXMLHandler static method)
breadth_first_search() (in module pyhrf.graph)
broken_help() (in module pyhrf.grid)
build_ctrl_tag_matrix() (in module pyhrf.boldsynth.scenarios)
build_graphs() (pyhrf.core.FmriData method)
(pyhrf.core.FmriGroupData method)
buildCosMat() (pyhrf.jde.jde_multi_sess.BOLDSampler_Multi_SessInput method)
(pyhrf.jde.jde_multi_sujets.BOLDSampler_MultiSujInput method)
(pyhrf.jde.jde_multi_sujets_alpha.BOLDSampler_MultiSujInput method)
(pyhrf.jde.models.BOLDSamplerInput method)
(pyhrf.jde.models.BOLDSampler_Multi_SessInput method)
(pyhrf.rfir.RFIREstim method)
buildDiagGaussianMat() (in module pyhrf.jde.hrf)
buildFiniteDiffMatrix() (in module pyhrf.boldsynth.hrf)
(in module pyhrf.vbjde.vem_tools)
buildLowFreqMat() (pyhrf.rfir.RFIREstim method)
buildNeighboursCoordLists() (pyhrf.boldsynth.spatialconfig.RegularLatticeMapping method)
buildNeighboursIndexLists() (pyhrf.boldsynth.spatialconfig.RegularLatticeMapping method)
buildOrder1FiniteDiffMatrix_central() (in module pyhrf.sandbox.physio)
(in module pyhrf.sandbox.physio_params)
buildOtherMatX() (pyhrf.jde.jde_multi_sess.BOLDSampler_Multi_SessInput method)
(pyhrf.jde.jde_multi_sujets.BOLDSampler_MultiSujInput method)
(pyhrf.jde.jde_multi_sujets_alpha.BOLDSampler_MultiSujInput method)
(pyhrf.jde.models.BOLDSamplerInput method)
(pyhrf.jde.models.BOLDSampler_Multi_SessInput method)
buildParadigmConvolMatrix() (pyhrf.jde.jde_multi_sess.BOLDSampler_Multi_SessInput method)
(pyhrf.jde.jde_multi_sujets.BOLDSampler_MultiSujInput method)
(pyhrf.jde.jde_multi_sujets_alpha.BOLDSampler_MultiSujInput method)
(pyhrf.jde.models.BOLDSamplerInput method)
(pyhrf.jde.models.BOLDSampler_Multi_SessInput method)
buildParadigmSingleCondMatrix() (pyhrf.jde.models.BOLDSamplerInput method)
buildPolyMat() (in module pyhrf.tools.misc)
(pyhrf.jde.jde_multi_sess.BOLDSampler_Multi_SessInput method)
(pyhrf.jde.jde_multi_sujets.BOLDSampler_MultiSujInput method)
(pyhrf.jde.jde_multi_sujets_alpha.BOLDSampler_MultiSujInput method)
(pyhrf.jde.models.BOLDSamplerInput method)
(pyhrf.jde.models.BOLDSampler_Multi_SessInput method)
(pyhrf.rfir.RFIREstim method)
buildSharedDataTree() (pyhrf.jde.models.BOLDGibbsSampler method)
(pyhrf.jde.models.BOLDGibbsSampler_AR method)
buildXMLString() (pyhrf.xmliobak.xmlbase.TypedXMLHandler method)
C
C (class in pyhrf.test.test_xml)
c (pyhrf.boldsynth.spatialconfig.RegularLatticeMapping attribute)
cache_exists() (in module pyhrf.tools.misc)
cache_filename() (in module pyhrf.tools.misc)
cached_eval() (in module pyhrf.tools.misc)
CachedEvalTest (class in pyhrf.test.toolsTest)
calc_asl_shape() (in module pyhrf.boldsynth.scenarios)
calc_linear_rfs() (in module pyhrf.sandbox.physio)
(in module pyhrf.sandbox.physio_params)
calc_nc2D() (in module pyhrf.tools.misc)
calcDt() (pyhrf.jde.jde_multi_sess.BOLDSampler_Multi_SessInput method)
(pyhrf.jde.jde_multi_sujets.BOLDSampler_MultiSujInput method)
(pyhrf.jde.jde_multi_sujets_alpha.BOLDSampler_MultiSujInput method)
(pyhrf.jde.models.BOLDSamplerInput method)
(pyhrf.jde.models.BOLDSampler_Multi_SessInput method)
calcEnergy() (pyhrf.jde.nrl.gammagaussian.InhomogeneousNRLSampler method)
calcFracLambdaTilde() (pyhrf.jde.nrl.bigaussian.NRLSampler method)
calcFracLambdaTildeWithIRRelCond() (pyhrf.jde.nrl.bigaussian.NRLSamplerWithRelVar method)
calcFracLambdaTildeWithRelCond() (pyhrf.jde.nrl.bigaussian.NRLSamplerWithRelVar method)
calculate_uncertainty() (in module pyhrf.sandbox.parcellation)
calcXh() (pyhrf.jde.hrf.HRF_two_parts_Sampler method)
(pyhrf.jde.hrf.HRFSampler method)
(pyhrf.jde.jde_multi_sess.HRF_MultiSess_Sampler method)
(pyhrf.jde.jde_multi_sujets.HRF_Sampler method)
(pyhrf.jde.jde_multi_sujets_alpha.HRF_Sampler method)
calcXResp() (pyhrf.jde.asl.ResponseSampler method)
(pyhrf.jde.asl_physio.ResponseSampler method)
(pyhrf.jde.asl_physio_1step.ResponseSampler method)
(pyhrf.jde.asl_physio_1step_params.ResponseSampler method)
(pyhrf.jde.asl_physio_det_fwdm.ResponseSampler method)
(pyhrf.jde.asl_physio_hierarchical.ResponseSampler method)
(pyhrf.jde.asl_physio_joint.ResponseSampler method)
call_if_func() (pyhrf.tools.aexpression.ArithmeticExpression method)
callback() (pyhrf.jde.models.CallbackCritDiff method)
(pyhrf.jde.samplerbase.GSDefaultCallbackHandler method)
(pyhrf.jde.samplerbase.GSPrintCallbackHandler method)
CallbackCritDiff (class in pyhrf.jde.models)
cartesian() (in module pyhrf.tools.misc)
cartesian_apply() (in module pyhrf.tools.misc)
cartesian_combine_args() (in module pyhrf.tools.misc)
cartesian_eval() (in module pyhrf.tools.misc)
cartesian_params() (in module pyhrf.tools.misc)
cartesian_test() (in module pyhrf.tools.misc)
CartesianTest (class in pyhrf.test.toolsTest)
cellDOMWriter() (pyhrf.xmliobak.xmlmatlab.MatlabXMLHandler static method)
cellTagDOMReader() (pyhrf.xmliobak.xmlmatlab.MatlabXMLHandler static method)
center_mask_at() (in module pyhrf.graph)
center_mask_at_v01() (in module pyhrf.graph)
center_mask_at_v02() (in module pyhrf.graph)
cexpand() (pyhrf.ndarray.xndarray method)
cfg_error_report() (in module pyhrf.configuration)
cflatten() (pyhrf.ndarray.xndarray method)
change_dim() (in module pyhrf.ui.vb_jde_analyser)
(in module pyhrf.ui.vb_jde_analyser_asl_fast)
(in module pyhrf.ui.vb_jde_analyser_bold_fast)
check() (pyhrf.tools.aexpression.ArithmeticExpression method)
check_against_truth() (pyhrf.sandbox.stats.GibbsSampler method)
(pyhrf.sandbox.stats.GSVariable method)
check_files_series() (in module pyhrf.tools.misc)
check_final_value() (pyhrf.jde.samplerbase.GibbsSamplerVariable method)
check_init_func() (pyhrf.xmliobak.xmlbase.XMLable2 method)
check_init_obj() (pyhrf.xmlio.Initable method)
check_initialization_arg() (pyhrf.sandbox.stats.GSVariable method)
check_stim_durations() (in module pyhrf.paradigm)
check_subdirs() (in module pyhrf.sandbox.data_parser)
checkAndSetInitHabit() (pyhrf.jde.nrl.habituation.NRLwithHabSampler method)
checkAndSetInitLabels() (pyhrf.jde.nrl.bigaussian.NRLSampler method)
checkAndSetInitNRL() (pyhrf.jde.nrl.bigaussian.NRLSampler method)
checkAndSetInitValue() (pyhrf.jde.asl.DriftCoeffSampler method)
(pyhrf.jde.asl.DriftVarianceSampler method)
(pyhrf.jde.asl.LabelSampler method)
(pyhrf.jde.asl.MixtureParamsSampler method)
(pyhrf.jde.asl.NoiseVarianceSampler method)
(pyhrf.jde.asl.PerfBaselineSampler method)
(pyhrf.jde.asl.PerfBaselineVarianceSampler method)
(pyhrf.jde.asl.PerfMixtureSampler method)
(pyhrf.jde.asl.PerfResponseLevelSampler method)
(pyhrf.jde.asl.ResponseLevelSampler method)
(pyhrf.jde.asl.ResponseSampler method)
(pyhrf.jde.asl.ResponseVarianceSampler method)
(pyhrf.jde.asl_physio.DriftCoeffSampler method)
(pyhrf.jde.asl_physio.DriftVarianceSampler method)
(pyhrf.jde.asl_physio.LabelSampler method)
(pyhrf.jde.asl_physio.MixtureParamsSampler method)
(pyhrf.jde.asl_physio.NoiseVarianceSampler method)
(pyhrf.jde.asl_physio.PerfBaselineSampler method)
(pyhrf.jde.asl_physio.PerfBaselineVarianceSampler method)
(pyhrf.jde.asl_physio.PerfMixtureSampler method)
(pyhrf.jde.asl_physio.PerfResponseLevelSampler method)
(pyhrf.jde.asl_physio.ResponseLevelSampler method)
(pyhrf.jde.asl_physio.ResponseSampler method)
(pyhrf.jde.asl_physio.ResponseVarianceSampler method)
(pyhrf.jde.asl_physio_1step.DriftCoeffSampler method)
(pyhrf.jde.asl_physio_1step.DriftVarianceSampler method)
(pyhrf.jde.asl_physio_1step.LabelSampler method)
(pyhrf.jde.asl_physio_1step.MixtureParamsSampler method)
(pyhrf.jde.asl_physio_1step.NoiseVarianceSampler method)
(pyhrf.jde.asl_physio_1step.PerfBaselineSampler method)
(pyhrf.jde.asl_physio_1step.PerfBaselineVarianceSampler method)
(pyhrf.jde.asl_physio_1step.PerfMixtureSampler method)
(pyhrf.jde.asl_physio_1step.PerfResponseLevelSampler method)
(pyhrf.jde.asl_physio_1step.ResponseLevelSampler method)
(pyhrf.jde.asl_physio_1step.ResponseSampler method)
(pyhrf.jde.asl_physio_1step.ResponseVarianceSampler method)
(pyhrf.jde.asl_physio_1step_params.DriftCoeffSampler method)
(pyhrf.jde.asl_physio_1step_params.DriftVarianceSampler method)
(pyhrf.jde.asl_physio_1step_params.LabelSampler method)
(pyhrf.jde.asl_physio_1step_params.MixtureParamsSampler method)
(pyhrf.jde.asl_physio_1step_params.NoiseVarianceSampler method)
(pyhrf.jde.asl_physio_1step_params.PerfBaselineSampler method)
(pyhrf.jde.asl_physio_1step_params.PerfBaselineVarianceSampler method)
(pyhrf.jde.asl_physio_1step_params.PerfMixtureSampler method)
(pyhrf.jde.asl_physio_1step_params.PerfResponseLevelSampler method)
(pyhrf.jde.asl_physio_1step_params.ResponseLevelSampler method)
(pyhrf.jde.asl_physio_1step_params.ResponseSampler method)
(pyhrf.jde.asl_physio_1step_params.ResponseVarianceSampler method)
(pyhrf.jde.asl_physio_det_fwdm.DriftCoeffSampler method)
(pyhrf.jde.asl_physio_det_fwdm.DriftVarianceSampler method)
(pyhrf.jde.asl_physio_det_fwdm.LabelSampler method)
(pyhrf.jde.asl_physio_det_fwdm.MixtureParamsSampler method)
(pyhrf.jde.asl_physio_det_fwdm.NoiseVarianceSampler method)
(pyhrf.jde.asl_physio_det_fwdm.PerfBaselineSampler method)
(pyhrf.jde.asl_physio_det_fwdm.PerfBaselineVarianceSampler method)
(pyhrf.jde.asl_physio_det_fwdm.PerfMixtureSampler method)
(pyhrf.jde.asl_physio_det_fwdm.PerfResponseLevelSampler method)
(pyhrf.jde.asl_physio_det_fwdm.ResponseLevelSampler method)
(pyhrf.jde.asl_physio_det_fwdm.ResponseSampler method)
(pyhrf.jde.asl_physio_det_fwdm.ResponseVarianceSampler method)
(pyhrf.jde.asl_physio_hierarchical.DriftCoeffSampler method)
(pyhrf.jde.asl_physio_hierarchical.DriftVarianceSampler method)
(pyhrf.jde.asl_physio_hierarchical.LabelSampler method)
(pyhrf.jde.asl_physio_hierarchical.MixtureParamsSampler method)
(pyhrf.jde.asl_physio_hierarchical.NoiseVarianceSampler method)
(pyhrf.jde.asl_physio_hierarchical.PerfBaselineSampler method)
(pyhrf.jde.asl_physio_hierarchical.PerfBaselineVarianceSampler method)
(pyhrf.jde.asl_physio_hierarchical.PerfMixtureSampler method)
(pyhrf.jde.asl_physio_hierarchical.PerfResponseLevelSampler method)
(pyhrf.jde.asl_physio_hierarchical.PhysioBOLDResponseVarianceSampler method)
(pyhrf.jde.asl_physio_hierarchical.PhysioPerfResponseVarianceSampler method)
(pyhrf.jde.asl_physio_hierarchical.PhysioTrueBOLDResponseVarianceSampler method)
(pyhrf.jde.asl_physio_hierarchical.ResponseLevelSampler method)
(pyhrf.jde.asl_physio_hierarchical.ResponseSampler method)
(pyhrf.jde.asl_physio_joint.DriftCoeffSampler method)
(pyhrf.jde.asl_physio_joint.DriftVarianceSampler method)
(pyhrf.jde.asl_physio_joint.LabelSampler method)
(pyhrf.jde.asl_physio_joint.MixtureParamsSampler method)
(pyhrf.jde.asl_physio_joint.NoiseVarianceSampler method)
(pyhrf.jde.asl_physio_joint.PerfBaselineSampler method)
(pyhrf.jde.asl_physio_joint.PerfBaselineVarianceSampler method)
(pyhrf.jde.asl_physio_joint.PerfMixtureSampler method)
(pyhrf.jde.asl_physio_joint.PerfResponseLevelSampler method)
(pyhrf.jde.asl_physio_joint.PhysioJointResponseVarianceSampler method)
(pyhrf.jde.asl_physio_joint.ResponseLevelSampler method)
(pyhrf.jde.asl_physio_joint.ResponseSampler method)
(pyhrf.jde.beta.BetaSampler method)
(pyhrf.jde.drift.DriftARSampler method)
(pyhrf.jde.drift.DriftSampler method)
(pyhrf.jde.drift.DriftSamplerWithRelVar method)
(pyhrf.jde.drift.ETASampler method)
(pyhrf.jde.hrf.HRFSampler method)
(pyhrf.jde.hrf.HRF_two_parts_Sampler method)
(pyhrf.jde.hrf.RHSampler method)
(pyhrf.jde.jde_multi_sess.BiGaussMixtureParams_Multi_Sess_NRLsBar_Sampler method)
(pyhrf.jde.jde_multi_sess.Drift_MultiSess_Sampler method)
(pyhrf.jde.jde_multi_sess.HRF_MultiSess_Sampler method)
(pyhrf.jde.jde_multi_sess.NRL_Multi_Sess_Sampler method)
(pyhrf.jde.jde_multi_sess.NRLsBar_Drift_Multi_Sess_Sampler method)
(pyhrf.jde.jde_multi_sess.NoiseVariance_Drift_Multi_Sess_Sampler method)
(pyhrf.jde.jde_multi_sess.Variance_GaussianNRL_Multi_Sess method)
(pyhrf.jde.jde_multi_sujets.Drift_MultiSubj_Sampler method)
(pyhrf.jde.jde_multi_sujets.ETASampler_MultiSubj method)
(pyhrf.jde.jde_multi_sujets.HRFVarianceSubjectSampler method)
(pyhrf.jde.jde_multi_sujets.HRF_Group_Sampler method)
(pyhrf.jde.jde_multi_sujets.HRF_Sampler method)
(pyhrf.jde.jde_multi_sujets.LabelSampler method)
(pyhrf.jde.jde_multi_sujets.MixtureParamsSampler method)
(pyhrf.jde.jde_multi_sujets.NRLs_Sampler method)
(pyhrf.jde.jde_multi_sujets.NoiseVariance_Drift_MultiSubj_Sampler method)
(pyhrf.jde.jde_multi_sujets.RHGroupSampler method)
(pyhrf.jde.jde_multi_sujets.Variance_GaussianNRL_Multi_Subj method)
(pyhrf.jde.jde_multi_sujets_alpha.AlphaVar_Sampler method)
(pyhrf.jde.jde_multi_sujets_alpha.Alpha_hgroup_Sampler method)
(pyhrf.jde.jde_multi_sujets_alpha.BiGaussMixtureParamsSampler method)
(pyhrf.jde.jde_multi_sujets_alpha.Drift_MultiSubj_Sampler method)
(pyhrf.jde.jde_multi_sujets_alpha.ETASampler_MultiSubj method)
(pyhrf.jde.jde_multi_sujets_alpha.HRFVarianceSubjectSampler method)
(pyhrf.jde.jde_multi_sujets_alpha.HRF_Group_Sampler method)
(pyhrf.jde.jde_multi_sujets_alpha.HRF_Sampler method)
(pyhrf.jde.jde_multi_sujets_alpha.LabelSampler method)
(pyhrf.jde.jde_multi_sujets_alpha.MixtureParamsSampler method)
(pyhrf.jde.jde_multi_sujets_alpha.NRLs_Sampler method)
(pyhrf.jde.jde_multi_sujets_alpha.NoiseVariance_Drift_MultiSubj_Sampler method)
(pyhrf.jde.jde_multi_sujets_alpha.RHGroupSampler method)
(pyhrf.jde.jde_multi_sujets_alpha.Variance_GaussianNRL_Multi_Subj method)
(pyhrf.jde.noise.NoiseARParamsSampler method)
(pyhrf.jde.noise.NoiseVarianceARSampler method)
(pyhrf.jde.noise.NoiseVarianceSampler method)
(pyhrf.jde.noise.NoiseVariance_Drift_Sampler method)
(pyhrf.jde.nrl.bigaussian.BiGaussMixtureParamsSampler method)
(pyhrf.jde.nrl.bigaussian.MixtureWeightsSampler method)
(pyhrf.jde.nrl.bigaussian.NRLSampler method)
(pyhrf.jde.nrl.bigaussian.NRL_Multi_Sess_Sampler method)
(pyhrf.jde.nrl.bigaussian.Variance_GaussianNRL_Multi_Sess method)
(pyhrf.jde.nrl.bigaussian_drift.BiGaussMixtureParams_Multi_Sess_NRLsBar_Sampler method)
(pyhrf.jde.nrl.bigaussian_drift.NRLsBar_Drift_Multi_Sess_Sampler method)
(pyhrf.jde.nrl.gammagaussian.GamGaussMixtureParamsSampler method)
(pyhrf.jde.nrl.gammagaussian.InhomogeneousNRLSampler method)
(pyhrf.jde.nrl.habituation.NRLwithHabSampler method)
(pyhrf.jde.nrl.trigaussian.TriGaussMixtureParamsSampler method)
(pyhrf.jde.samplerbase.GibbsSamplerVariable method)
(pyhrf.jde.wsampler.WSampler method)
(pyhrf.jde.wsampler.W_Drift_Sampler method)
checkGraph() (pyhrf.tools.misc.Pipeline method)
chewUpOnsets() (pyhrf.jde.jde_multi_sess.BOLDSampler_Multi_SessInput method)
(pyhrf.jde.jde_multi_sujets.BOLDSampler_MultiSujInput method)
(pyhrf.jde.jde_multi_sujets_alpha.BOLDSampler_MultiSujInput method)
(pyhrf.jde.models.BOLDSamplerInput method)
(pyhrf.jde.models.BOLDSampler_Multi_SessInput method)
child() (pyhrf.xmlio.UiNode method)
ChildClass (class in pyhrf.test.test_xml)
childCount() (pyhrf.xmlio.UiNode method)
children_ (pyhrf.sandbox.parcellation.Ward attribute)
(pyhrf.sandbox.parcellation.WardAgglomeration attribute)
chooseSampleNext() (pyhrf.jde.samplerbase.GibbsSamplerVariable method)
CLASS_NAMES (pyhrf.jde.asl.LabelSampler attribute)
(pyhrf.jde.asl_physio.LabelSampler attribute)
(pyhrf.jde.asl_physio_1step.LabelSampler attribute)
(pyhrf.jde.asl_physio_1step_params.LabelSampler attribute)
(pyhrf.jde.asl_physio_det_fwdm.LabelSampler attribute)
(pyhrf.jde.asl_physio_hierarchical.LabelSampler attribute)
(pyhrf.jde.asl_physio_joint.LabelSampler attribute)
(pyhrf.jde.jde_multi_sujets.LabelSampler attribute)
(pyhrf.jde.jde_multi_sujets_alpha.LabelSampler attribute)
(pyhrf.jde.jde_multi_sujets_alpha.NRLs_Sampler attribute)
(pyhrf.jde.nrl.bigaussian.NRLSampler attribute)
(pyhrf.jde.nrl.trigaussian.GGGNRLSampler attribute)
(pyhrf.jde.wsampler.WSampler attribute)
(pyhrf.jde.wsampler.W_Drift_Sampler attribute)
CLASSES (pyhrf.jde.asl.LabelSampler attribute)
(pyhrf.jde.asl_physio.LabelSampler attribute)
(pyhrf.jde.asl_physio_1step.LabelSampler attribute)
(pyhrf.jde.asl_physio_1step_params.LabelSampler attribute)
(pyhrf.jde.asl_physio_det_fwdm.LabelSampler attribute)
(pyhrf.jde.asl_physio_hierarchical.LabelSampler attribute)
(pyhrf.jde.asl_physio_joint.LabelSampler attribute)
(pyhrf.jde.jde_multi_sujets.LabelSampler attribute)
(pyhrf.jde.jde_multi_sujets_alpha.LabelSampler attribute)
(pyhrf.jde.jde_multi_sujets_alpha.NRLs_Sampler attribute)
(pyhrf.jde.nrl.bigaussian.NRLSampler attribute)
(pyhrf.jde.nrl.trigaussian.GGGNRLSampler attribute)
(pyhrf.jde.wsampler.WSampler attribute)
(pyhrf.jde.wsampler.W_Drift_Sampler attribute)
clean_cache() (in module pyhrf.validation.config)
clean_memory() (pyhrf.rfir.RFIREstim method)
clean_output_files() (pyhrf.ui.analyser_ui.FMRIAnalyser method)
(pyhrf.ui.treatment.FMRITreatment method)
cleanMem() (pyhrf.jde.jde_multi_sess.BOLDSampler_Multi_SessInput method)
(pyhrf.jde.jde_multi_sujets.BOLDSampler_MultiSujInput method)
(pyhrf.jde.jde_multi_sujets_alpha.BOLDSampler_MultiSujInput method)
(pyhrf.jde.models.BOLDSamplerInput method)
(pyhrf.jde.models.BOLDSampler_Multi_SessInput method)
cleanMemory() (pyhrf.jde.jde_multi_sess.NRL_Multi_Sess_Sampler method)
(pyhrf.jde.nrl.ar.NRLARSampler method)
(pyhrf.jde.nrl.bigaussian.NRLSampler method)
(pyhrf.jde.nrl.bigaussian.NRL_Multi_Sess_Sampler method)
(pyhrf.jde.nrl.habituation.NRLwithHabSampler method)
cleanObservables() (pyhrf.jde.jde_multi_sess.BOLDGibbs_Multi_SessSampler method)
(pyhrf.jde.jde_multi_sujets.BOLDGibbs_Multi_SubjSampler method)
(pyhrf.jde.jde_multi_sujets_alpha.BOLDGibbs_Multi_SubjSampler method)
(pyhrf.jde.models.BOLDGibbsSampler method)
(pyhrf.jde.models.BOLDGibbsSampler_AR method)
(pyhrf.jde.nrl.bigaussian.NRLSampler method)
(pyhrf.jde.nrl.habituation.NRLwithHabSampler method)
(pyhrf.jde.samplerbase.GibbsSamplerVariable method)
cleanPrecalculations() (pyhrf.jde.asl.WN_BiG_ASLSamplerInput method)
(pyhrf.jde.asl_physio.WN_BiG_ASLSamplerInput method)
(pyhrf.jde.asl_physio_1step.WN_BiG_ASLSamplerInput method)
(pyhrf.jde.asl_physio_1step_params.WN_BiG_ASLSamplerInput method)
(pyhrf.jde.asl_physio_det_fwdm.WN_BiG_ASLSamplerInput method)
(pyhrf.jde.asl_physio_hierarchical.WN_BiG_ASLSamplerInput method)
(pyhrf.jde.asl_physio_joint.WN_BiG_ASLSamplerInput method)
(pyhrf.jde.jde_multi_sess.BOLDSampler_Multi_SessInput method)
(pyhrf.jde.models.ARN_BiG_BOLDSamplerInput method)
(pyhrf.jde.models.BOLDSamplerInput method)
(pyhrf.jde.models.BOLDSampler_Multi_SessInput method)
(pyhrf.jde.models.Hab_WN_BiG_BOLDSamplerInput method)
(pyhrf.jde.models.WN_BiG_BOLDSamplerInput method)
(pyhrf.jde.models.WN_BiG_Drift_BOLDSamplerInput method)
clear() (pyhrf.tools.backports.OrderedDict method)
closestsorted() (in module pyhrf.tools.misc)
ClusterMixin (class in pyhrf.sandbox.parcellation)
CmdInputTest (class in pyhrf.test.test_treatment)
CmdParcellationTest (class in pyhrf.test.test_parcellation)
COLORS (pyhrf.tools.misc.AnsiColorizer attribute)
compute_aawwXhQXhi() (pyhrf.jde.noise.NoiseVarianceSamplerWithRelVar method)
compute_aaXhQXhi() (pyhrf.jde.noise.NoiseVarianceSampler method)
compute_average() (pyhrf.core.FmriData method)
compute_bRpR() (in module pyhrf.jde.asl_physio)
(in module pyhrf.jde.asl_physio_1step)
(in module pyhrf.jde.asl_physio_1step_params)
(in module pyhrf.jde.asl_physio_det_fwdm)
(in module pyhrf.jde.asl_physio_hierarchical)
(in module pyhrf.jde.asl_physio_joint)
compute_consensus_clusters_parallel() (in module pyhrf.sandbox.func_BMA_consensus_clustering)
compute_contrasts() (in module pyhrf.vbjde.vem_tools)
compute_crit_diff() (pyhrf.jde.jde_multi_sess.BOLDGibbs_Multi_SessSampler method)
(pyhrf.jde.jde_multi_sujets.BOLDGibbs_Multi_SubjSampler method)
(pyhrf.jde.jde_multi_sujets_alpha.BOLDGibbs_Multi_SubjSampler method)
(pyhrf.jde.models.BOLDGibbsSampler method)
(pyhrf.jde.models.BOLDGibbsSampler_AR method)
compute_ext_field() (pyhrf.jde.asl.LabelSampler method)
(pyhrf.jde.asl_physio.LabelSampler method)
(pyhrf.jde.asl_physio_1step.LabelSampler method)
(pyhrf.jde.asl_physio_1step_params.LabelSampler method)
(pyhrf.jde.asl_physio_det_fwdm.LabelSampler method)
(pyhrf.jde.asl_physio_hierarchical.LabelSampler method)
(pyhrf.jde.asl_physio_joint.LabelSampler method)
(pyhrf.jde.jde_multi_sujets.LabelSampler method)
(pyhrf.jde.jde_multi_sujets_alpha.LabelSampler method)
compute_fit() (pyhrf.rfir.RFIREstim method)
Compute_FreeEnergy() (in module pyhrf.vbjde.vem_tools)
compute_fwhm() (in module pyhrf.sandbox.parcellation)
compute_hrf() (in module pyhrf.sandbox.parcellation)
Compute_INV_R_and_R_and_DET_R() (pyhrf.rfir.RFIREstim method)
compute_mat_X_2() (in module pyhrf.vbjde.vem_tools)
compute_mixt_dist() (in module pyhrf.sandbox.parcellation)
compute_mixt_dist_skgmm() (in module pyhrf.sandbox.parcellation)
Compute_onset_matrix3() (pyhrf.rfir.RFIREstim method)
compute_residuals() (pyhrf.jde.asl.PerfBaselineSampler method)
(pyhrf.jde.asl_physio.PerfBaselineSampler method)
(pyhrf.jde.asl_physio_1step.PerfBaselineSampler method)
(pyhrf.jde.asl_physio_1step_params.PerfBaselineSampler method)
(pyhrf.jde.asl_physio_det_fwdm.PerfBaselineSampler method)
(pyhrf.jde.asl_physio_hierarchical.PerfBaselineSampler method)
(pyhrf.jde.asl_physio_joint.PerfBaselineSampler method)
compute_roc_labels() (in module pyhrf.stats.misc)
compute_roc_labels_scikit() (in module pyhrf.stats.misc)
compute_StS_StY() (in module pyhrf.jde.asl)
(in module pyhrf.jde.asl_physio)
(in module pyhrf.jde.asl_physio_1step)
(in module pyhrf.jde.asl_physio_1step_params)
(in module pyhrf.jde.asl_physio_det_fwdm)
(in module pyhrf.jde.asl_physio_hierarchical)
(in module pyhrf.jde.asl_physio_joint)
compute_StS_StY_deterministic() (in module pyhrf.jde.asl_physio)
(in module pyhrf.jde.asl_physio_1step)
(in module pyhrf.jde.asl_physio_1step_params)
(in module pyhrf.jde.asl_physio_det_fwdm)
(in module pyhrf.jde.asl_physio_hierarchical)
compute_summary_stats() (pyhrf.jde.nrl.bigaussian.NRLSampler method)
compute_T_Pvalue() (in module pyhrf.stats.misc)
compute_uward_dist() (in module pyhrf.sandbox.parcellation)
compute_uward_dist2() (in module pyhrf.sandbox.parcellation)
compute_wa() (pyhrf.jde.asl.PerfBaselineSampler method)
(pyhrf.jde.asl_physio.PerfBaselineSampler method)
(pyhrf.jde.asl_physio_1step.PerfBaselineSampler method)
(pyhrf.jde.asl_physio_1step_params.PerfBaselineSampler method)
(pyhrf.jde.asl_physio_det_fwdm.PerfBaselineSampler method)
(pyhrf.jde.asl_physio_hierarchical.PerfBaselineSampler method)
(pyhrf.jde.asl_physio_joint.PerfBaselineSampler method)
compute_y_tilde() (pyhrf.jde.asl.DriftCoeffSampler method)
(pyhrf.jde.asl.NoiseVarianceSampler method)
(pyhrf.jde.asl_physio.DriftCoeffSampler method)
(pyhrf.jde.asl_physio.NoiseVarianceSampler method)
(pyhrf.jde.asl_physio_1step.DriftCoeffSampler method)
(pyhrf.jde.asl_physio_1step.NoiseVarianceSampler method)
(pyhrf.jde.asl_physio_1step_params.DriftCoeffSampler method)
(pyhrf.jde.asl_physio_1step_params.NoiseVarianceSampler method)
(pyhrf.jde.asl_physio_det_fwdm.DriftCoeffSampler method)
(pyhrf.jde.asl_physio_det_fwdm.NoiseVarianceSampler method)
(pyhrf.jde.asl_physio_hierarchical.DriftCoeffSampler method)
(pyhrf.jde.asl_physio_hierarchical.NoiseVarianceSampler method)
(pyhrf.jde.asl_physio_joint.DriftCoeffSampler method)
(pyhrf.jde.asl_physio_joint.NoiseVarianceSampler method)
computeAA() (pyhrf.jde.jde_multi_sess.NRL_Multi_Sess_Sampler method)
(pyhrf.jde.jde_multi_sujets.NRLs_Sampler method)
(pyhrf.jde.jde_multi_sujets_alpha.NRLs_Sampler method)
(pyhrf.jde.nrl.bigaussian.NRLSampler method)
(pyhrf.jde.nrl.bigaussian.NRL_Multi_Sess_Sampler method)
computeB() (in module pyhrf.test.toolsTest)
computeC() (in module pyhrf.test.toolsTest)
computeComponentsApost() (pyhrf.jde.jde_multi_sess.NRL_Multi_Sess_Sampler method)
(pyhrf.jde.nrl.bigaussian.NRLSampler method)
(pyhrf.jde.nrl.bigaussian.NRL_Multi_Sess_Sampler method)
(pyhrf.jde.nrl.habituation.NRLwithHabSampler method)
computeComponentsApostWithRelVar() (pyhrf.jde.nrl.bigaussian.NRLSamplerWithRelVar method)
computeContrasts() (pyhrf.jde.nrl.bigaussian.NRLSampler method)
computeD() (in module pyhrf.test.toolsTest)
computeF() (in module pyhrf.test.toolsTest)
computeFit() (in module pyhrf.vbjde.vem_tools)
(pyhrf.jde.asl.ASLSampler method)
(pyhrf.jde.asl_physio.ASLPhysioSampler method)
(pyhrf.jde.asl_physio_1step.ASLPhysioSampler method)
(pyhrf.jde.asl_physio_1step_params.ASLPhysioSampler method)
(pyhrf.jde.asl_physio_det_fwdm.ASLPhysioSampler method)
(pyhrf.jde.asl_physio_hierarchical.ASLPhysioSampler method)
(pyhrf.jde.asl_physio_joint.ASLPhysioSampler method)
(pyhrf.jde.jde_multi_sess.BOLDGibbs_Multi_SessSampler method)
(pyhrf.jde.jde_multi_sujets.BOLDGibbs_Multi_SubjSampler method)
(pyhrf.jde.jde_multi_sujets_alpha.BOLDGibbs_Multi_SubjSampler method)
(pyhrf.jde.models.BOLDGibbsSampler method)
(pyhrf.jde.models.BOLDGibbsSampler_AR method)
(pyhrf.jde.models.Drift_BOLDGibbsSampler method)
(pyhrf.jde.samplerbase.GibbsSampler method)
computeFit_asl() (in module pyhrf.vbjde.vem_tools)
computehXQXh() (in module pyhrf.jde.models)
computeInvAutoCorrNoise() (pyhrf.jde.noise.NoiseARParamsSampler method)
computeJ() (in module pyhrf.test.toolsTest)
computeK() (in module pyhrf.test.toolsTest)
computeL() (in module pyhrf.test.toolsTest)
computeMean() (pyhrf.jde.nrl.gammagaussian.InhomogeneousNRLSampler method)
computeMeanClassApost() (pyhrf.jde.nrl.gammagaussian.InhomogeneousNRLSampler method)
computeMeanVarClassApost() (pyhrf.jde.nrl.ar.NRLARSampler method)
computemoyq() (pyhrf.jde.wsampler.W_Drift_Sampler method)
(pyhrf.jde.wsampler.WSampler method)
computemoyqvox() (pyhrf.jde.nrl.bigaussian.NRLSamplerWithRelVar method)
computeMXhQXh() (pyhrf.jde.noise.NoiseVarianceSampler method)
computePl() (in module pyhrf.jde.models)
computePMStimInducedSignal() (pyhrf.jde.jde_multi_sess.BOLDGibbs_Multi_SessSampler method)
(pyhrf.jde.jde_multi_sujets.BOLDGibbs_Multi_SubjSampler method)
(pyhrf.jde.jde_multi_sujets_alpha.BOLDGibbs_Multi_SubjSampler method)
(pyhrf.jde.models.BOLDGibbsSampler method)
(pyhrf.jde.models.BOLDGibbsSampler_AR method)
computeProbW1() (pyhrf.jde.wsampler.W_Drift_Sampler method)
(pyhrf.jde.wsampler.WSampler method)
computeRR() (pyhrf.jde.asl.ResponseLevelSampler method)
(pyhrf.jde.asl_physio.ResponseLevelSampler method)
(pyhrf.jde.asl_physio_1step.ResponseLevelSampler method)
(pyhrf.jde.asl_physio_1step_params.ResponseLevelSampler method)
(pyhrf.jde.asl_physio_det_fwdm.ResponseLevelSampler method)
(pyhrf.jde.asl_physio_hierarchical.ResponseLevelSampler method)
(pyhrf.jde.asl_physio_joint.ResponseLevelSampler method)
computeStDS_StDY() (pyhrf.jde.hrf.HRF_Drift_Sampler method)
(pyhrf.jde.hrf.HRFARSampler method)
(pyhrf.jde.hrf.HRFSampler method)
(pyhrf.jde.hrf.HRF_two_parts_Sampler method)
(pyhrf.jde.hrf.HRFwithHabSampler method)
(pyhrf.jde.jde_multi_sess.HRF_MultiSess_Sampler method)
(pyhrf.jde.jde_multi_sujets.HRF_Sampler method)
(pyhrf.jde.jde_multi_sujets_alpha.HRF_Sampler method)
computeStDS_StDY_from_HRFSampler() (pyhrf.jde.jde_multi_sess.HRF_MultiSess_Sampler method)
computeStDS_StDY_one_session() (pyhrf.jde.jde_multi_sess.HRF_MultiSess_Sampler method)
computeStDS_StDY_one_subject() (pyhrf.jde.jde_multi_sujets.HRF_Sampler method)
(pyhrf.jde.jde_multi_sujets_alpha.HRF_Sampler method)
computeStDS_StDY_WithRelVar() (pyhrf.jde.hrf.HRF_Drift_SamplerWithRelVar method)
(pyhrf.jde.hrf.HRFSamplerWithRelVar method)
computeSumjaXh() (in module pyhrf.jde.models)
computeSumWAxh() (pyhrf.jde.nrl.bigaussian.NRLSamplerWithRelVar method)
computeVariablesApost() (pyhrf.jde.nrl.gammagaussian.InhomogeneousNRLSampler method)
computeVarXhtQ() (pyhrf.jde.nrl.bigaussian.NRLSampler method)
(pyhrf.jde.nrl.habituation.NRLwithHabSampler method)
(pyhrf.jde.wsampler.WSampler method)
computeVarYTilde() (pyhrf.jde.drift.DriftARSampler method)
(pyhrf.jde.noise.NoiseVarianceARSampler method)
(pyhrf.jde.nrl.ar.NRLARSampler method)
(pyhrf.jde.nrl.gammagaussian.InhomogeneousNRLSampler method)
computeVarYTildeHab() (pyhrf.jde.nrl.habituation.NRLwithHabSampler method)
computeVarYTildeHabOld() (pyhrf.jde.nrl.habituation.NRLwithHabSampler method)
computeVarYTildeOpt() (pyhrf.jde.asl.BOLDResponseLevelSampler method)
(pyhrf.jde.asl.PerfResponseLevelSampler method)
(pyhrf.jde.asl.ResponseLevelSampler method)
(pyhrf.jde.asl_physio.BOLDResponseLevelSampler method)
(pyhrf.jde.asl_physio.PerfResponseLevelSampler method)
(pyhrf.jde.asl_physio.ResponseLevelSampler method)
(pyhrf.jde.asl_physio_1step.BOLDResponseLevelSampler method)
(pyhrf.jde.asl_physio_1step.PerfResponseLevelSampler method)
(pyhrf.jde.asl_physio_1step.ResponseLevelSampler method)
(pyhrf.jde.asl_physio_1step_params.BOLDResponseLevelSampler method)
(pyhrf.jde.asl_physio_1step_params.PerfResponseLevelSampler method)
(pyhrf.jde.asl_physio_1step_params.ResponseLevelSampler method)
(pyhrf.jde.asl_physio_det_fwdm.BOLDResponseLevelSampler method)
(pyhrf.jde.asl_physio_det_fwdm.PerfResponseLevelSampler method)
(pyhrf.jde.asl_physio_det_fwdm.ResponseLevelSampler method)
(pyhrf.jde.asl_physio_hierarchical.BOLDResponseLevelSampler method)
(pyhrf.jde.asl_physio_hierarchical.PerfResponseLevelSampler method)
(pyhrf.jde.asl_physio_hierarchical.ResponseLevelSampler method)
(pyhrf.jde.asl_physio_joint.BOLDResponseLevelSampler method)
(pyhrf.jde.asl_physio_joint.PerfResponseLevelSampler method)
(pyhrf.jde.asl_physio_joint.ResponseLevelSampler method)
(pyhrf.jde.jde_multi_sujets.NRLs_Sampler method)
(pyhrf.jde.jde_multi_sujets_alpha.NRLs_Sampler method)
(pyhrf.jde.nrl.bigaussian.NRLSampler method)
(pyhrf.jde.nrl.bigaussian_drift.NRL_Drift_Sampler method)
computeVarYTildeOptWithRelVar() (pyhrf.jde.nrl.bigaussian.NRLSamplerWithRelVar method)
(pyhrf.jde.nrl.bigaussian_drift.NRL_Drift_SamplerWithRelVar method)
computeVarYTildeSessionOpt() (pyhrf.jde.jde_multi_sess.NRL_Multi_Sess_Sampler method)
(pyhrf.jde.nrl.bigaussian.NRL_Multi_Sess_Sampler method)
computeWA() (pyhrf.jde.nrl.bigaussian.NRLSamplerWithRelVar method)
computeWithJeffreyPriors() (pyhrf.jde.asl.MixtureParamsSampler method)
(pyhrf.jde.asl_physio.MixtureParamsSampler method)
(pyhrf.jde.asl_physio_1step.MixtureParamsSampler method)
(pyhrf.jde.asl_physio_1step_params.MixtureParamsSampler method)
(pyhrf.jde.asl_physio_det_fwdm.MixtureParamsSampler method)
(pyhrf.jde.asl_physio_hierarchical.MixtureParamsSampler method)
(pyhrf.jde.asl_physio_joint.MixtureParamsSampler method)
(pyhrf.jde.jde_multi_sess.BiGaussMixtureParams_Multi_Sess_NRLsBar_Sampler method)
(pyhrf.jde.jde_multi_sujets.MixtureParamsSampler method)
(pyhrf.jde.jde_multi_sujets_alpha.BiGaussMixtureParamsSampler method)
(pyhrf.jde.jde_multi_sujets_alpha.MixtureParamsSampler method)
(pyhrf.jde.nrl.bigaussian.BiGaussMixtureParamsSampler method)
(pyhrf.jde.nrl.bigaussian_drift.BiGaussMixtureParams_Multi_Sess_NRLsBar_Sampler method)
(pyhrf.jde.nrl.trigaussian.TriGaussMixtureParamsSampler method)
computeWithProperPriors() (pyhrf.jde.jde_multi_sess.BiGaussMixtureParams_Multi_Sess_NRLsBar_Sampler method)
(pyhrf.jde.jde_multi_sujets_alpha.BiGaussMixtureParamsSampler method)
(pyhrf.jde.nrl.bigaussian.BiGaussMixtureParamsSampler method)
(pyhrf.jde.nrl.bigaussian_drift.BiGaussMixtureParams_Multi_Sess_NRLsBar_Sampler method)
computeWithProperPriorsWithRelVar() (pyhrf.jde.nrl.bigaussian.BiGaussMixtureParamsSamplerWithRelVar method)
(pyhrf.jde.nrl.bigaussian.BiGaussMixtureParamsSamplerWithRelVar_OLD method)
computeWW() (pyhrf.jde.noise.NoiseVarianceSamplerWithRelVar method)
computeXh() (in module pyhrf.jde.models)
computeYBar() (in module pyhrf.jde.models)
computeYTilde() (in module pyhrf.jde.models)
(pyhrf.jde.asl.BOLDResponseSampler method)
(pyhrf.jde.asl.PerfResponseSampler method)
(pyhrf.jde.asl.ResponseSampler method)
(pyhrf.jde.asl_physio.PhysioBOLDResponseSampler method)
(pyhrf.jde.asl_physio.PhysioPerfResponseSampler method)
(pyhrf.jde.asl_physio.ResponseSampler method)
(pyhrf.jde.asl_physio_1step.PhysioBOLDResponseSampler method)
(pyhrf.jde.asl_physio_1step.PhysioPerfResponseSampler method)
(pyhrf.jde.asl_physio_1step.ResponseSampler method)
(pyhrf.jde.asl_physio_1step_params.PhysioBOLDResponseSampler method)
(pyhrf.jde.asl_physio_1step_params.PhysioPerfResponseSampler method)
(pyhrf.jde.asl_physio_1step_params.ResponseSampler method)
(pyhrf.jde.asl_physio_det_fwdm.PhysioBOLDResponseSampler method)
(pyhrf.jde.asl_physio_det_fwdm.PhysioPerfResponseSampler method)
(pyhrf.jde.asl_physio_det_fwdm.ResponseSampler method)
(pyhrf.jde.asl_physio_hierarchical.PhysioBOLDResponseSampler method)
(pyhrf.jde.asl_physio_hierarchical.PhysioPerfResponseSampler method)
(pyhrf.jde.asl_physio_hierarchical.ResponseSampler method)
(pyhrf.jde.asl_physio_joint.PhysioBOLDResponseSampler method)
(pyhrf.jde.asl_physio_joint.PhysioPerfResponseSampler method)
(pyhrf.jde.asl_physio_joint.ResponseSampler method)
computeYTilde_Pl() (in module pyhrf.jde.models)
condense_series() (in module pyhrf.tools.misc)
Condition (class in pyhrf.core)
ConfigurationError
connected_components() (in module pyhrf.graph)
connected_components_iter() (in module pyhrf.graph)
constraint_norm1_b() (in module pyhrf.vbjde.vem_tools)
contrasts_mean_var_classes() (in module pyhrf.vbjde.vem_tools)
contrasts_to_spm_vec() (in module pyhrf.paradigm)
convex_hull_mask() (in module pyhrf.tools.misc)
copy() (pyhrf.ndarray.xndarray method)
(pyhrf.tools.backports.OrderedDict method)
cosine_drifts_basis() (in module pyhrf.vbjde.vem_tools)
count_homo_cliques() (in module pyhrf.boldsynth.field)
countLabels() (pyhrf.jde.asl.LabelSampler method)
(pyhrf.jde.asl_physio.LabelSampler method)
(pyhrf.jde.asl_physio_1step.LabelSampler method)
(pyhrf.jde.asl_physio_1step_params.LabelSampler method)
(pyhrf.jde.asl_physio_det_fwdm.LabelSampler method)
(pyhrf.jde.asl_physio_hierarchical.LabelSampler method)
(pyhrf.jde.asl_physio_joint.LabelSampler method)
(pyhrf.jde.jde_multi_sujets.LabelSampler method)
(pyhrf.jde.jde_multi_sujets_alpha.LabelSampler method)
(pyhrf.jde.nrl.bigaussian.NRLSampler method)
(pyhrf.jde.nrl.gammagaussian.InhomogeneousNRLSampler method)
covariance_matrix() (in module pyhrf.vbjde.vem_tools)
Cpt_AcceptNewBeta_Graph() (in module pyhrf.jde.beta)
Cpt_Distrib_P_beta_graph() (in module pyhrf.jde.beta)
Cpt_Exact_lnZ_graph() (in module pyhrf.jde.beta)
Cpt_Expected_U_graph() (in module pyhrf.jde.beta)
cpt_ppm_a_apost() (in module pyhrf.stats.misc)
cpt_ppm_a_mcmc() (in module pyhrf.stats.misc)
cpt_ppm_a_norm() (in module pyhrf.stats.misc)
cpt_ppm_g_apost() (in module pyhrf.stats.misc)
cpt_ppm_g_mcmc() (in module pyhrf.stats.misc)
cpt_ppm_g_norm() (in module pyhrf.stats.misc)
Cpt_U_graph() (in module pyhrf.boldsynth.pottsfield.swendsenwang)
Cpt_Vec_Estim_lnZ_Graph() (in module pyhrf.jde.beta)
Cpt_Vec_Estim_lnZ_Graph_fast() (in module pyhrf.jde.beta)
Cpt_Vec_Estim_lnZ_Graph_fast2() (in module pyhrf.jde.beta)
Cpt_Vec_Estim_lnZ_Graph_fast3() (in module pyhrf.jde.beta)
Cpt_Vec_Estim_lnZ_OLD_Graph() (in module pyhrf.jde.beta)
Cpt_Vec_Estim_lnZ_Onsager() (in module pyhrf.jde.beta)
Cpt_Vec_U_graph() (in module pyhrf.boldsynth.pottsfield.swendsenwang)
cpt_XSigmaX() (pyhrf.rfir.RFIREstim method)
CptDefaultGraphLinks() (in module pyhrf.boldsynth.pottsfield.swendsenwang)
CptDefaultGraphNodesLabels() (in module pyhrf.boldsynth.pottsfield.swendsenwang)
CptDefaultGraphWeight() (in module pyhrf.boldsynth.pottsfield.swendsenwang)
CptFctQ() (pyhrf.rfir.RFIREstim method)
CptRefGrphNgbhPosi() (in module pyhrf.boldsynth.pottsfield.swendsenwang)
CptSigma() (pyhrf.rfir.RFIREstim method)
create_3Dlabels_Potts() (in module pyhrf.boldsynth.scenarios)
create_alpha_for_hrfgroup() (in module pyhrf.boldsynth.scenarios)
create_AR_noise() (in module pyhrf.boldsynth.scenarios)
create_asl_from_stim_induced() (in module pyhrf.boldsynth.scenarios)
(in module pyhrf.sandbox.physio)
create_bigaussian_nrls() (in module pyhrf.boldsynth.scenarios)
create_bold() (in module pyhrf.boldsynth.scenarios)
create_bold_controlled_variance() (in module pyhrf.boldsynth.scenarios)
create_bold_from_hbr_and_cbv() (in module pyhrf.sandbox.physio)
(in module pyhrf.sandbox.physio_params)
create_bold_from_stim_induced() (in module pyhrf.boldsynth.scenarios)
create_bold_from_stim_induced_RealNoise() (in module pyhrf.boldsynth.scenarios)
create_bold_stim_induced_signal() (in module pyhrf.boldsynth.scenarios)
create_canonical_hrf() (in module pyhrf.boldsynth.scenarios)
create_conditions() (in module pyhrf.vbjde.vem_tools)
create_connected_label_clusters() (in module pyhrf.boldsynth.scenarios)
create_drift_coeffs() (in module pyhrf.boldsynth.scenarios)
create_drift_coeffs_asl() (in module pyhrf.boldsynth.scenarios)
create_evoked_physio_signals() (in module pyhrf.sandbox.physio)
(in module pyhrf.sandbox.physio_params)
create_features() (in module pyhrf.validation.valid_sandbox_parcellation)
create_gaussian_hrf_subject() (in module pyhrf.boldsynth.scenarios)
create_gaussian_hrf_subject_and_group() (in module pyhrf.jde.jde_multi_sujets)
create_gaussian_noise() (in module pyhrf.boldsynth.scenarios)
create_gaussian_noise_asl() (in module pyhrf.boldsynth.scenarios)
create_gaussian_nrls_sessions_and_mean() (in module pyhrf.boldsynth.scenarios)
create_gsmooth_hrf() (in module pyhrf.boldsynth.scenarios)
create_hrf() (in module pyhrf.boldsynth.scenarios)
create_hrf_from_territories() (in module pyhrf.boldsynth.scenarios)
create_k_parameters() (in module pyhrf.sandbox.physio_params)
create_labels_Potts() (in module pyhrf.boldsynth.scenarios)
create_labels_vol() (in module pyhrf.boldsynth.scenarios)
create_language_paradigm() (in module pyhrf.boldsynth.scenarios)
create_localizer_paradigm() (in module pyhrf.boldsynth.scenarios)
create_localizer_paradigm_a() (in module pyhrf.boldsynth.scenarios)
create_localizer_paradigm_avd() (in module pyhrf.boldsynth.scenarios)
create_multisess_stim_induced_signal() (in module pyhrf.boldsynth.scenarios)
create_multisess_stim_induced_signal_asl() (in module pyhrf.boldsynth.scenarios)
create_neighbours() (in module pyhrf.vbjde.vem_tools)
create_null_drift() (in module pyhrf.boldsynth.scenarios)
create_omega_prf() (in module pyhrf.sandbox.physio)
(in module pyhrf.sandbox.physio_params)
create_options() (in module pyhrf.grid)
create_outliers() (in module pyhrf.boldsynth.scenarios)
create_paradigm_un_evnt() (in module pyhrf.boldsynth.scenarios)
create_perf_baseline() (in module pyhrf.boldsynth.scenarios)
create_perf_stim_induced_signal() (in module pyhrf.boldsynth.scenarios)
create_physio_brf() (in module pyhrf.sandbox.physio)
(in module pyhrf.sandbox.physio_params)
create_physio_prf() (in module pyhrf.sandbox.physio)
(in module pyhrf.sandbox.physio_params)
create_polynomial_drift() (in module pyhrf.boldsynth.scenarios)
create_polynomial_drift_from_coeffs() (in module pyhrf.boldsynth.scenarios)
create_polynomial_drift_from_coeffs_asl() (in module pyhrf.boldsynth.scenarios)
create_prf() (in module pyhrf.boldsynth.scenarios)
create_projection_kernels() (in module pyhrf.surface)
create_small_bold_simulation() (in module pyhrf.boldsynth.scenarios)
create_stim_induced_signal() (in module pyhrf.boldsynth.scenarios)
create_stim_induced_signal_Parsi() (in module pyhrf.boldsynth.scenarios)
create_t() (in module pyhrf.test.test_xml)
create_tbg_neural_efficacies() (in module pyhrf.sandbox.physio)
(in module pyhrf.sandbox.physio_params)
create_time_invariant_gaussian_brls() (in module pyhrf.boldsynth.scenarios)
create_time_invariant_gaussian_nrls() (in module pyhrf.boldsynth.scenarios)
create_time_invariant_gaussian_prls() (in module pyhrf.boldsynth.scenarios)
create_treatment() (in module pyhrf.ui.treatment)
create_treatment_surf() (in module pyhrf.ui.treatment)
create_unnormed_gaussian_hrf_subject() (in module pyhrf.jde.jde_multi_sujets)
create_varying_hrf() (in module pyhrf.boldsynth.scenarios)
create_Xh() (in module pyhrf.boldsynth.scenarios)
createBiGaussCovarNRL() (in module pyhrf.boldsynth.scenarios)
createDocument() (pyhrf.xmliobak.xmlbase.TypedXMLHandler method)
createExpandedArray() (pyhrf.boldsynth.spatialconfig.Mapper1D method)
createFromGUI() (pyhrf.boldsynth.spatialconfig.RegularLatticeMapping static method)
(pyhrf.boldsynth.spatialconfig.UnboundSpatialMapping static method)
createWAxh() (pyhrf.jde.nrl.bigaussian.NRLSamplerWithRelVar method)
crop_array() (in module pyhrf.tools.misc)
CropTest (class in pyhrf.test.toolsTest)
cuboidPrinter() (in module pyhrf.tools.misc)
cumFreq() (in module pyhrf.stats.misc)
D
D (class in pyhrf.test.test_xml)
DataLoadTest (class in pyhrf.test.iotest)
default_nb_its (pyhrf.jde.asl.ASLSampler attribute)
(pyhrf.jde.asl_physio.ASLPhysioSampler attribute)
(pyhrf.jde.asl_physio_1step.ASLPhysioSampler attribute)
(pyhrf.jde.asl_physio_1step_params.ASLPhysioSampler attribute)
(pyhrf.jde.asl_physio_det_fwdm.ASLPhysioSampler attribute)
(pyhrf.jde.asl_physio_hierarchical.ASLPhysioSampler attribute)
(pyhrf.jde.asl_physio_joint.ASLPhysioSampler attribute)
(pyhrf.jde.jde_multi_sess.BOLDGibbs_Multi_SessSampler attribute)
(pyhrf.jde.jde_multi_sujets.BOLDGibbs_Multi_SubjSampler attribute)
(pyhrf.jde.jde_multi_sujets_alpha.BOLDGibbs_Multi_SubjSampler attribute)
(pyhrf.jde.models.BOLDGibbsSampler attribute)
(pyhrf.jde.models.BOLDGibbsSampler_AR attribute)
(pyhrf.jde.models.Drift_BOLDGibbsSampler attribute)
(pyhrf.jde.models.W_BOLDGibbsSampler attribute)
(pyhrf.jde.models.W_Drift_BOLDGibbsSampler attribute)
(pyhrf.rfir.RFIREstim attribute)
default_stop_crit1 (pyhrf.rfir.RFIREstim attribute)
default_stop_crit2 (pyhrf.rfir.RFIREstim attribute)
defaultParameters (pyhrf.jde.jde_multi_sujets.HRF_Group_Sampler attribute)
(pyhrf.jde.jde_multi_sujets_alpha.Drift_MultiSubj_Sampler attribute)
(pyhrf.jde.noise.NoiseARParamsSampler attribute)
(pyhrf.jde.nrl.bigaussian.NRL_Multi_Sess_Sampler attribute)
(pyhrf.jde.nrl.bigaussian.Variance_GaussianNRL_Multi_Sess attribute)
(pyhrf.jde.nrl.bigaussian_drift.BiGaussMixtureParams_Multi_Sess_NRLsBar_Sampler attribute)
(pyhrf.jde.nrl.gammagaussian.GamGaussMixtureParamsSampler attribute)
(pyhrf.jde.nrl.gammagaussian.InhomogeneousNRLSampler attribute)
(pyhrf.xmliobak.xmlbase.XMLParamDrivenClass attribute)
delete_condition() (pyhrf.paradigm.Paradigm method)
deltaWCorr0() (pyhrf.jde.nrl.bigaussian.NRLSamplerWithRelVar method)
deltaWCorr1() (pyhrf.jde.nrl.bigaussian.NRLSamplerWithRelVar method)
DeprecatedXMLFormatException
describeRois() (in module pyhrf.tools.misc)
descrip() (pyhrf.ndarray.xndarray method)
descrip_shape() (pyhrf.ndarray.xndarray method)
detectCyclity() (pyhrf.tools.misc.Pipeline method)
detectShortCircuit() (pyhrf.tools.misc.Pipeline method)
detectSignError() (pyhrf.jde.hrf.HRF_two_parts_Sampler method)
(pyhrf.jde.hrf.HRFSampler method)
diagBlock() (in module pyhrf.tools.misc)
DiagBlockTest (class in pyhrf.test.toolsTest)
dictDOMWriter() (pyhrf.xmliobak.xmlbase.TypedXMLHandler static method)
dictTagDOMReader() (pyhrf.xmliobak.xmlbase.TypedXMLHandler static method)
DictToStringTest (class in pyhrf.test.toolsTest)
disable() (pyhrf.tools.misc.AnsiColorizer method)
discard_rois() (pyhrf.core.FmriData method)
discard_small_rois() (pyhrf.core.FmriData method)
DispatchedTasksManager (class in pyhrf.grid)
dist() (in module pyhrf.validation.valid_beta_estim)
distance() (in module pyhrf.tools.misc)
divide() (pyhrf.ndarray.xndarray method)
do_if_nonexistent_file() (in module pyhrf.tools.misc)
doubleDOMWriter() (pyhrf.xmliobak.xmlmatlab.MatlabXMLHandler static method)
doubleTagDOMReader() (pyhrf.xmliobak.xmlmatlab.MatlabXMLHandler static method)
Drift_BOLDGibbsSampler (class in pyhrf.jde.models)
Drift_MultiSess_Sampler (class in pyhrf.jde.jde_multi_sess)
Drift_MultiSubj_Sampler (class in pyhrf.jde.jde_multi_sujets)
(class in pyhrf.jde.jde_multi_sujets_alpha)
DriftARSampler (class in pyhrf.jde.drift)
DriftCoeffSampler (class in pyhrf.jde.asl)
(class in pyhrf.jde.asl_physio)
(class in pyhrf.jde.asl_physio_1step)
(class in pyhrf.jde.asl_physio_1step_params)
(class in pyhrf.jde.asl_physio_det_fwdm)
(class in pyhrf.jde.asl_physio_hierarchical)
(class in pyhrf.jde.asl_physio_joint)
drifts_coeffs_fit() (in module pyhrf.vbjde.vem_tools)
DriftSampler (class in pyhrf.jde.drift)
DriftSamplerWithRelVar (class in pyhrf.jde.drift)
DriftVarianceSampler (class in pyhrf.jde.asl)
(class in pyhrf.jde.asl_physio)
(class in pyhrf.jde.asl_physio_1step)
(class in pyhrf.jde.asl_physio_1step_params)
(class in pyhrf.jde.asl_physio_det_fwdm)
(class in pyhrf.jde.asl_physio_hierarchical)
(class in pyhrf.jde.asl_physio_joint)
dummy_jde() (in module pyhrf.jde.asl_2steps)
dump_func() (in module pyhrf.parallel)
dump_roi_datasets() (pyhrf.ui.treatment.FMRITreatment method)
duplicate_brf() (in module pyhrf.boldsynth.scenarios)
duplicate_hrf() (in module pyhrf.boldsynth.scenarios)
duplicate_noise_var() (in module pyhrf.boldsynth.scenarios)
duplicate_prf() (in module pyhrf.boldsynth.scenarios)
DuplicateVariableException
E
EM_solver() (pyhrf.rfir.RFIREstim method)
enable() (pyhrf.tools.misc.AnsiColorizer method)
enable_draft_testing() (pyhrf.ui.analyser_ui.FMRIAnalyser method)
(pyhrf.ui.jde.JDEMCMCAnalyser method)
(pyhrf.ui.treatment.FMRITreatment method)
enable_sampling() (pyhrf.sandbox.stats.GSVariable method)
ENDC (pyhrf.tools.misc.AnsiColorizer attribute)
eps (in module pyhrf.vbjde.vem_bold)
error() (pyhrf.tools.message.MessageColor class method)
(pyhrf.tools.message.MessageNoColor class method)
(pyhrf.tools.message.NoMessage method)
Estim_lnZ_ngbhd_graph() (in module pyhrf.jde.beta)
Estim_lnZ_Onsager() (in module pyhrf.jde.beta)
ETASampler (class in pyhrf.jde.drift)
ETASampler_MultiSess (class in pyhrf.jde.drift)
(class in pyhrf.jde.jde_multi_sess)
ETASampler_MultiSubj (class in pyhrf.jde.jde_multi_sujets)
(class in pyhrf.jde.jde_multi_sujets_alpha)
evaluate() (pyhrf.tools.aexpression.ArithmeticExpression method)
exec_t() (in module pyhrf.ui.treatment)
execute() (pyhrf.ui.treatment.FMRITreatment method)
expand() (pyhrf.ndarray.xndarray method)
expand_array_in_mask() (in module pyhrf.ndarray)
expandArray() (pyhrf.boldsynth.spatialconfig.Mapper1D method)
expandxndarray() (pyhrf.boldsynth.spatialconfig.xndarrayMapper1D method)
expectation_A_asl() (in module pyhrf.vbjde.vem_tools)
expectation_A_ms() (in module pyhrf.vbjde.vem_tools)
expectation_C_asl() (in module pyhrf.vbjde.vem_tools)
expectation_C_ms() (in module pyhrf.vbjde.vem_tools)
expectation_G_asl() (in module pyhrf.vbjde.vem_tools)
expectation_G_ms() (in module pyhrf.vbjde.vem_tools)
expectation_H_asl() (in module pyhrf.vbjde.vem_tools)
expectation_H_ms() (in module pyhrf.vbjde.vem_tools)
expectation_H_ms_concat() (in module pyhrf.vbjde.vem_tools)
expectation_ptilde_hrf() (in module pyhrf.vbjde.vem_tools)
expectation_ptilde_labels() (in module pyhrf.vbjde.vem_tools)
expectation_Ptilde_Likelihood() (in module pyhrf.vbjde.vem_tools)
expectation_ptilde_likelihood() (in module pyhrf.vbjde.vem_tools)
expectation_ptilde_nrls() (in module pyhrf.vbjde.vem_tools)
expectation_Q_asl() (in module pyhrf.vbjde.vem_tools)
expectation_Q_async_asl() (in module pyhrf.vbjde.vem_tools)
expectation_Q_ms() (in module pyhrf.vbjde.vem_tools)
explode() (pyhrf.ndarray.xndarray method)
explode_a() (pyhrf.ndarray.xndarray method)
extend_sampled_events() (in module pyhrf.paradigm)
extract_file_series() (in module pyhrf.tools.misc)
extract_sub_mesh() (in module pyhrf.surface)
extract_sub_mesh_with_files() (in module pyhrf.surface)
Extract_TTP_whM_from_group() (in module pyhrf.tools.misc)
Extract_TTP_whM_hrf() (in module pyhrf.tools.misc)
extractRoiMask() (in module pyhrf.tools.misc)
F
FALSE_NEG (pyhrf.jde.jde_multi_sujets.LabelSampler attribute)
(pyhrf.jde.jde_multi_sujets_alpha.NRLs_Sampler attribute)
(pyhrf.jde.nrl.bigaussian.NRLSampler attribute)
(pyhrf.jde.nrl.trigaussian.GGGNRLSampler attribute)
FALSE_POS (pyhrf.jde.jde_multi_sujets.LabelSampler attribute)
(pyhrf.jde.jde_multi_sujets_alpha.NRLs_Sampler attribute)
(pyhrf.jde.nrl.bigaussian.NRLSampler attribute)
(pyhrf.jde.nrl.trigaussian.GGGNRLSampler attribute)
feature_extraction() (in module pyhrf.sandbox.parcellation)
FeatureExtractionTest (class in pyhrf.validation.valid_sandbox_parcellation)
fetchDefaultParameters() (pyhrf.xmliobak.xmlbase.XMLParamDrivenClass method)
field_energy_calculator (class in pyhrf.validation.valid_rndm_field)
FieldFuncsTest (class in pyhrf.test.boldsynthTest)
figfn() (in module pyhrf.validation.config)
FileHandlingTest (class in pyhrf.test.iotest)
fill() (pyhrf.ndarray.xndarray method)
fillOutputs2() (pyhrf.jde.drift.DriftARSampler method)
filter_crashed_results() (pyhrf.ui.analyser_ui.FMRIAnalyser method)
finalizeEstimation() (pyhrf.ui.vb_jde_analyser_asl_fast.JDEVEMAnalyser method)
(pyhrf.ui.vb_jde_analyser_bold_fast.JDEVEMAnalyser method)
finalizeSampling() (pyhrf.jde.asl.ASLSampler method)
(pyhrf.jde.asl_physio.ASLPhysioSampler method)
(pyhrf.jde.asl_physio_1step.ASLPhysioSampler method)
(pyhrf.jde.asl_physio_1step_params.ASLPhysioSampler method)
(pyhrf.jde.asl_physio_det_fwdm.ASLPhysioSampler method)
(pyhrf.jde.asl_physio_hierarchical.ASLPhysioSampler method)
(pyhrf.jde.asl_physio_joint.ASLPhysioSampler method)
(pyhrf.jde.drift.DriftARSampler method)
(pyhrf.jde.hrf.HRFARSampler method)
(pyhrf.jde.hrf.HRFSampler method)
(pyhrf.jde.hrf.HRFSamplerWithRelVar method)
(pyhrf.jde.hrf.HRF_two_parts_Sampler method)
(pyhrf.jde.hrf.HRFwithHabSampler method)
(pyhrf.jde.jde_multi_sess.BOLDGibbs_Multi_SessSampler method)
(pyhrf.jde.jde_multi_sess.BiGaussMixtureParams_Multi_Sess_NRLsBar_Sampler method)
(pyhrf.jde.jde_multi_sess.HRF_MultiSess_Sampler method)
(pyhrf.jde.jde_multi_sess.NRL_Multi_Sess_Sampler method)
(pyhrf.jde.jde_multi_sujets.BOLDGibbs_Multi_SubjSampler method)
(pyhrf.jde.jde_multi_sujets.HRF_Group_Sampler method)
(pyhrf.jde.jde_multi_sujets.HRF_Sampler method)
(pyhrf.jde.jde_multi_sujets_alpha.BOLDGibbs_Multi_SubjSampler method)
(pyhrf.jde.jde_multi_sujets_alpha.BiGaussMixtureParamsSampler method)
(pyhrf.jde.jde_multi_sujets_alpha.HRF_Group_Sampler method)
(pyhrf.jde.jde_multi_sujets_alpha.HRF_Sampler method)
(pyhrf.jde.noise.NoiseARParamsSampler method)
(pyhrf.jde.noise.NoiseVarianceARSampler method)
(pyhrf.jde.noise.NoiseVarianceSampler method)
(pyhrf.jde.noise.NoiseVarianceSamplerWithRelVar method)
(pyhrf.jde.noise.NoiseVariancewithHabSampler method)
(pyhrf.jde.nrl.bigaussian.BiGaussMixtureParamsSampler method)
(pyhrf.jde.nrl.bigaussian.NRLSampler method)
(pyhrf.jde.nrl.bigaussian.NRL_Multi_Sess_Sampler method)
(pyhrf.jde.nrl.bigaussian_drift.BiGaussMixtureParams_Multi_Sess_NRLsBar_Sampler method)
(pyhrf.jde.nrl.gammagaussian.InhomogeneousNRLSampler method)
(pyhrf.jde.nrl.habituation.NRLwithHabSampler method)
(pyhrf.jde.nrl.trigaussian.TriGaussMixtureParamsSampler method)
(pyhrf.jde.samplerbase.GibbsSampler method)
(pyhrf.jde.samplerbase.GibbsSamplerVariable method)
(pyhrf.jde.wsampler.WSampler method)
(pyhrf.jde.wsampler.W_Drift_Sampler method)
fit() (pyhrf.sandbox.parcellation.Ward method)
(pyhrf.sandbox.parcellation.WardAgglomeration method)
fit_hrf_two_gammas() (in module pyhrf.vbjde.vem_tools)
fix_explosion() (pyhrf.parcellation.Ant method)
flatten() (pyhrf.ndarray.xndarray method)
flatten_and_graph() (in module pyhrf.graph)
flatten_labels_vol() (in module pyhrf.boldsynth.scenarios)
flattenArray() (pyhrf.boldsynth.spatialconfig.Mapper1D method)
flattenData() (pyhrf.boldsynth.spatialconfig.RegularLatticeMapping2 method)
flattenElements() (in module pyhrf.boldsynth.spatialconfig)
flattenxndarray() (pyhrf.boldsynth.spatialconfig.xndarrayMapper1D method)
flip() (in module pyhrf.plot)
floatDOMWriter() (pyhrf.xmliobak.xmlbase.TypedXMLHandler static method)
floatTagDOMReader() (pyhrf.xmliobak.xmlbase.TypedXMLHandler static method)
FMRIAnalyser (class in pyhrf.ui.analyser_ui)
FmriData (class in pyhrf.core)
FMRIDataTest (class in pyhrf.test.core_test)
FmriGroupData (class in pyhrf.core)
FMRITreatment (class in pyhrf.ui.treatment)
foo() (in module pyhrf.test.seppotest)
(in module pyhrf.test.test_parallel)
(in module pyhrf.test.toolsTest)
(in module pyhrf.tools.misc)
foo_a() (in module pyhrf.test.toolsTest)
foo_default_arg() (in module pyhrf.test.toolsTest)
foo_func() (in module pyhrf.test.toolsTest)
foo_multiple_returns() (in module pyhrf.test.toolsTest)
foo_raise() (in module pyhrf.test.test_parallel)
force_end() (pyhrf.parcellation.World method)
forge_nrl_files() (in module pyhrf.sandbox.data_parser)
format_duration() (in module pyhrf.tools.misc)
format_serie() (in module pyhrf.tools.misc)
free_energy_computation() (in module pyhrf.vbjde.vem_tools)
from_csv() (pyhrf.paradigm.Paradigm class method)
from_param_c() (pyhrf.test.test_xml.T class method)
from_py_object (pyhrf.xmlio.UiNode attribute)
from_session_dict() (pyhrf.paradigm.Paradigm class method)
from_simu_ui() (pyhrf.core.FmriData class method)
from_simulation_dict() (pyhrf.core.FmriData class method)
from_spm_mat() (pyhrf.paradigm.Paradigm class method)
from_stuff() (pyhrf.test.test_xml.B class method)
from_surf_files() (pyhrf.core.FmriData class method)
from_surf_ui() (pyhrf.core.FmriData class method)
from_ui_node (pyhrf.xmlio.Initable attribute)
from_vol_files (pyhrf.core.FmriData attribute)
from_vol_files_rel (pyhrf.core.FmriData attribute)
from_vol_ui (pyhrf.core.FmriData attribute)
from_xml (pyhrf.xmlio.UiNode attribute)
from_xml() (in module pyhrf.xmlio)
(in module pyhrf.xmliobak.xmlbase)
fromkeys() (pyhrf.tools.backports.OrderedDict class method)
fromLattice() (pyhrf.boldsynth.spatialconfig.NeighbourhoodSystem static method)
(pyhrf.boldsynth.spatialconfig.SpatialMapping2 static method)
fromMesh() (pyhrf.boldsynth.spatialconfig.NeighbourhoodSystem static method)
(pyhrf.boldsynth.spatialconfig.SpatialMapping2 static method)
fun() (in module pyhrf.vbjde.vem_tools)
functions (pyhrf.tools.aexpression.ArithmeticExpression attribute)
FuncWrapper (class in pyhrf.xmliobak.xmlbase)
FWHM() (in module pyhrf.sandbox.parcellation)
G
GamGaussMixtureParamsSampler (class in pyhrf.jde.nrl.gammagaussian)
GammaGenerator (class in pyhrf.stats.random)
gaussian_blur() (in module pyhrf.tools.misc)
gaussian_kernel() (in module pyhrf.tools.misc)
GaussianGenerator (class in pyhrf.stats.random)
genBezierHRF() (in module pyhrf.boldsynth.hrf)
genCanoBezierHRF() (in module pyhrf.boldsynth.hrf)
generate() (pyhrf.boldsynth.spatialconfig.StateField method)
(pyhrf.stats.random.BetaGenerator method)
(pyhrf.stats.random.GammaGenerator method)
(pyhrf.stats.random.GaussianGenerator method)
(pyhrf.stats.random.IndependentMixtureLaw method)
(pyhrf.stats.random.LogNormalGenerator method)
(pyhrf.stats.random.RandomGenerator method)
(pyhrf.stats.random.UniformGenerator method)
(pyhrf.stats.random.ZeroGenerator method)
generate_features() (in module pyhrf.sandbox.parcellation)
genExpHRF() (in module pyhrf.boldsynth.hrf)
genGaussianSmoothHRF() (in module pyhrf.boldsynth.hrf)
genPepperSaltField() (in module pyhrf.boldsynth.field)
genPotts() (in module pyhrf.boldsynth.field)
genPottsMap() (in module pyhrf.boldsynth.field)
genPriorCov() (in module pyhrf.boldsynth.hrf)
GeometryTest (class in pyhrf.test.toolsTest)
get() (pyhrf.grid.Task method)
get_2Dtable_string() (in module pyhrf.tools.misc)
get_accuracy() (pyhrf.jde.asl.DriftCoeffSampler method)
(pyhrf.jde.hrf.HRFSampler method)
(pyhrf.jde.jde_multi_sess.Drift_MultiSess_Sampler method)
(pyhrf.jde.jde_multi_sess.HRF_MultiSess_Sampler method)
(pyhrf.jde.jde_multi_sess.NRL_Multi_Sess_Sampler method)
(pyhrf.jde.jde_multi_sess.NRLsBar_Drift_Multi_Sess_Sampler method)
(pyhrf.jde.jde_multi_sujets.Drift_MultiSubj_Sampler method)
(pyhrf.jde.jde_multi_sujets.HRF_Group_Sampler method)
(pyhrf.jde.jde_multi_sujets.HRF_Sampler method)
(pyhrf.jde.jde_multi_sujets_alpha.Drift_MultiSubj_Sampler method)
(pyhrf.jde.jde_multi_sujets_alpha.HRF_Group_Sampler method)
(pyhrf.jde.jde_multi_sujets_alpha.HRF_Sampler method)
(pyhrf.jde.samplerbase.GibbsSamplerVariable method)
get_accuracy_against_truth() (pyhrf.sandbox.stats.GSVariable method)
get_arg_for_ui() (pyhrf.xmlio.Initable method)
get_arg_from_ui() (pyhrf.xmlio.Initable method)
get_attribute() (pyhrf.xmlio.UiNode method)
get_axes_domains() (pyhrf.ndarray.xndarray method)
get_axes_ids() (pyhrf.ndarray.xndarray method)
get_axis_id() (pyhrf.ndarray.xndarray method)
get_axis_name() (pyhrf.ndarray.xndarray method)
get_bold_shape() (in module pyhrf.boldsynth.scenarios)
get_cache_filename() (in module pyhrf.tools.misc)
get_children() (pyhrf.xmlio.UiNode method)
get_condition_names() (pyhrf.core.FmriData method)
get_current_means() (pyhrf.jde.asl.MixtureParamsSampler method)
(pyhrf.jde.asl_physio.MixtureParamsSampler method)
(pyhrf.jde.asl_physio_1step.MixtureParamsSampler method)
(pyhrf.jde.asl_physio_1step_params.MixtureParamsSampler method)
(pyhrf.jde.asl_physio_det_fwdm.MixtureParamsSampler method)
(pyhrf.jde.asl_physio_hierarchical.MixtureParamsSampler method)
(pyhrf.jde.asl_physio_joint.MixtureParamsSampler method)
(pyhrf.jde.jde_multi_sujets.MixtureParamsSampler method)
(pyhrf.jde.jde_multi_sujets_alpha.MixtureParamsSampler method)
get_current_vars() (pyhrf.jde.asl.MixtureParamsSampler method)
(pyhrf.jde.asl_physio.MixtureParamsSampler method)
(pyhrf.jde.asl_physio_1step.MixtureParamsSampler method)
(pyhrf.jde.asl_physio_1step_params.MixtureParamsSampler method)
(pyhrf.jde.asl_physio_det_fwdm.MixtureParamsSampler method)
(pyhrf.jde.asl_physio_hierarchical.MixtureParamsSampler method)
(pyhrf.jde.asl_physio_joint.MixtureParamsSampler method)
(pyhrf.jde.jde_multi_sujets.MixtureParamsSampler method)
(pyhrf.jde.jde_multi_sujets_alpha.MixtureParamsSampler method)
get_custom_init() (pyhrf.sandbox.stats.GSVariable method)
get_data_file_name() (in module pyhrf.core)
get_data_files() (pyhrf.core.FmriData method)
(pyhrf.ui.treatment.FMRITreatment method)
get_domain() (pyhrf.ndarray.xndarray method)
get_domain_idx() (pyhrf.ndarray.xndarray method)
get_dshape() (pyhrf.ndarray.xndarray method)
get_estim_value_for_check() (pyhrf.sandbox.stats.GSVariable method)
get_extra_data() (pyhrf.core.FmriData method)
get_extra_info() (pyhrf.ndarray.xndarray method)
get_file_blocs() (pyhrf.sandbox.data_parser.StructuredDataParser method)
get_files() (pyhrf.sandbox.data_parser.StructuredDataParser method)
get_final_labels() (pyhrf.parcellation.World method)
get_final_summary() (pyhrf.jde.nrl.bigaussian.NRLSampler method)
(pyhrf.jde.samplerbase.GibbsSamplerVariable method)
get_final_value() (pyhrf.jde.asl.DriftCoeffSampler method)
(pyhrf.jde.hrf.HRFSampler method)
(pyhrf.jde.hrf.RHSampler method)
(pyhrf.jde.jde_multi_sess.Drift_MultiSess_Sampler method)
(pyhrf.jde.jde_multi_sujets.Drift_MultiSubj_Sampler method)
(pyhrf.jde.jde_multi_sujets_alpha.Drift_MultiSubj_Sampler method)
(pyhrf.jde.samplerbase.GibbsSamplerVariable method)
get_func() (pyhrf.tools.misc.Pipeline method)
get_graph() (pyhrf.core.FmriData method)
get_info() (pyhrf.paradigm.Paradigm method)
get_init_func() (pyhrf.xmlio.Initable method)
get_joined_and_rastered() (pyhrf.paradigm.Paradigm method)
get_joined_durations() (pyhrf.core.FmriData method)
(pyhrf.paradigm.Paradigm method)
get_joined_durations_dim() (pyhrf.paradigm.Paradigm method)
get_joined_onsets() (pyhrf.core.FmriData method)
(pyhrf.paradigm.Paradigm method)
get_joined_onsets_dim() (pyhrf.paradigm.Paradigm method)
get_label() (pyhrf.ui.analyser_ui.FMRIAnalyser method)
(pyhrf.ui.glm_analyser.GLMAnalyser method)
(pyhrf.ui.glm_ui.GLMAnalyser method)
(pyhrf.ui.jde.JDEAnalyser method)
get_last() (pyhrf.jde.samplerbase.Trajectory method)
(pyhrf.sandbox.stats.Trajectory method)
get_leaf() (in module pyhrf.tools.misc)
get_MAP_labels() (pyhrf.jde.asl.LabelSampler method)
get_mat_X() (pyhrf.jde.asl.BOLDResponseSampler method)
(pyhrf.jde.asl.PerfResponseSampler method)
(pyhrf.jde.asl.ResponseSampler method)
(pyhrf.jde.asl_physio.PhysioBOLDResponseSampler method)
(pyhrf.jde.asl_physio.PhysioPerfResponseSampler method)
(pyhrf.jde.asl_physio.ResponseSampler method)
(pyhrf.jde.asl_physio_1step.PhysioBOLDResponseSampler method)
(pyhrf.jde.asl_physio_1step.PhysioPerfResponseSampler method)
(pyhrf.jde.asl_physio_1step.ResponseSampler method)
(pyhrf.jde.asl_physio_1step_params.PhysioBOLDResponseSampler method)
(pyhrf.jde.asl_physio_1step_params.PhysioPerfResponseSampler method)
(pyhrf.jde.asl_physio_1step_params.ResponseSampler method)
(pyhrf.jde.asl_physio_det_fwdm.PhysioBOLDResponseSampler method)
(pyhrf.jde.asl_physio_det_fwdm.PhysioPerfResponseSampler method)
(pyhrf.jde.asl_physio_det_fwdm.ResponseSampler method)
(pyhrf.jde.asl_physio_hierarchical.PhysioBOLDResponseSampler method)
(pyhrf.jde.asl_physio_hierarchical.PhysioPerfResponseSampler method)
(pyhrf.jde.asl_physio_hierarchical.PhysioTrueBOLDResponseSampler method)
(pyhrf.jde.asl_physio_hierarchical.ResponseSampler method)
(pyhrf.jde.asl_physio_joint.PhysioBOLDResponseSampler method)
(pyhrf.jde.asl_physio_joint.PhysioPerfResponseSampler method)
(pyhrf.jde.asl_physio_joint.ResponseSampler method)
get_mat_XtWX() (pyhrf.jde.asl_physio_det_fwdm.PhysioBOLDResponseSampler method)
get_mat_XtX() (pyhrf.jde.asl.BOLDResponseSampler method)
(pyhrf.jde.asl.PerfResponseSampler method)
(pyhrf.jde.asl.ResponseSampler method)
(pyhrf.jde.asl_physio.PhysioBOLDResponseSampler method)
(pyhrf.jde.asl_physio.PhysioPerfResponseSampler method)
(pyhrf.jde.asl_physio.ResponseSampler method)
(pyhrf.jde.asl_physio_1step.PhysioBOLDResponseSampler method)
(pyhrf.jde.asl_physio_1step.PhysioPerfResponseSampler method)
(pyhrf.jde.asl_physio_1step.ResponseSampler method)
(pyhrf.jde.asl_physio_1step_params.PhysioBOLDResponseSampler method)
(pyhrf.jde.asl_physio_1step_params.PhysioPerfResponseSampler method)
(pyhrf.jde.asl_physio_1step_params.ResponseSampler method)
(pyhrf.jde.asl_physio_det_fwdm.PhysioBOLDResponseSampler method)
(pyhrf.jde.asl_physio_det_fwdm.PhysioPerfResponseSampler method)
(pyhrf.jde.asl_physio_det_fwdm.ResponseSampler method)
(pyhrf.jde.asl_physio_hierarchical.PhysioBOLDResponseSampler method)
(pyhrf.jde.asl_physio_hierarchical.PhysioPerfResponseSampler method)
(pyhrf.jde.asl_physio_hierarchical.PhysioTrueBOLDResponseSampler method)
(pyhrf.jde.asl_physio_hierarchical.ResponseSampler method)
(pyhrf.jde.asl_physio_joint.PhysioBOLDResponseSampler method)
(pyhrf.jde.asl_physio_joint.PhysioPerfResponseSampler method)
(pyhrf.jde.asl_physio_joint.ResponseSampler method)
get_nb_rois() (pyhrf.core.FmriData method)
get_nb_trials() (pyhrf.paradigm.Paradigm method)
get_nb_vox_in_mask() (pyhrf.core.FmriData method)
get_ndims() (pyhrf.ndarray.xndarray method)
get_new_axis_name() (pyhrf.ndarray.xndarray method)
get_orientation() (pyhrf.ndarray.xndarray method)
get_outputs() (pyhrf.sandbox.stats.GibbsSampler method)
get_parameters_comments() (pyhrf.xmlio.Initable method)
(pyhrf.xmliobak.xmlbase.XMLable method)
(pyhrf.xmliobak.xmlbase.XMLable2 method)
get_parameters_meta() (pyhrf.xmlio.Initable method)
(pyhrf.xmliobak.xmlbase.XMLable method)
(pyhrf.xmliobak.xmlbase.XMLable2 method)
get_parameters_to_show() (pyhrf.xmlio.Initable method)
(pyhrf.xmliobak.xmlbase.XMLable method)
(pyhrf.xmliobak.xmlbase.XMLable2 method)
get_random_init() (pyhrf.sandbox.stats.GSVariable method)
get_rastered() (pyhrf.paradigm.Paradigm method)
get_rlrl() (pyhrf.jde.asl.ResponseSampler method)
(pyhrf.jde.asl_physio.ResponseSampler method)
(pyhrf.jde.asl_physio_1step.ResponseSampler method)
(pyhrf.jde.asl_physio_1step_params.ResponseSampler method)
(pyhrf.jde.asl_physio_det_fwdm.ResponseSampler method)
(pyhrf.jde.asl_physio_hierarchical.ResponseSampler method)
(pyhrf.jde.asl_physio_joint.ResponseSampler method)
get_roi_id() (pyhrf.core.FmriData method)
(pyhrf.core.FmriGroupData method)
get_roi_mask() (pyhrf.core.FmriData method)
get_roi_simulation() (in module pyhrf.core)
get_src_doc_path() (in module pyhrf.core)
get_src_path() (in module pyhrf.core)
get_stackX() (pyhrf.jde.asl.BOLDResponseSampler method)
(pyhrf.jde.asl.PerfResponseSampler method)
(pyhrf.jde.asl.ResponseSampler method)
(pyhrf.jde.asl_physio.PhysioBOLDResponseSampler method)
(pyhrf.jde.asl_physio.PhysioPerfResponseSampler method)
(pyhrf.jde.asl_physio.ResponseSampler method)
(pyhrf.jde.asl_physio_1step.PhysioBOLDResponseSampler method)
(pyhrf.jde.asl_physio_1step.PhysioPerfResponseSampler method)
(pyhrf.jde.asl_physio_1step.ResponseSampler method)
(pyhrf.jde.asl_physio_1step_params.PhysioBOLDResponseSampler method)
(pyhrf.jde.asl_physio_1step_params.PhysioPerfResponseSampler method)
(pyhrf.jde.asl_physio_1step_params.ResponseSampler method)
(pyhrf.jde.asl_physio_det_fwdm.PhysioBOLDResponseSampler method)
(pyhrf.jde.asl_physio_det_fwdm.PhysioPerfResponseSampler method)
(pyhrf.jde.asl_physio_det_fwdm.ResponseSampler method)
(pyhrf.jde.asl_physio_hierarchical.PhysioBOLDResponseSampler method)
(pyhrf.jde.asl_physio_hierarchical.PhysioPerfResponseSampler method)
(pyhrf.jde.asl_physio_hierarchical.PhysioTrueBOLDResponseSampler method)
(pyhrf.jde.asl_physio_hierarchical.ResponseSampler method)
(pyhrf.jde.asl_physio_joint.PhysioBOLDResponseSampler method)
(pyhrf.jde.asl_physio_joint.PhysioPerfResponseSampler method)
(pyhrf.jde.asl_physio_joint.ResponseSampler method)
get_stimulus_names() (pyhrf.paradigm.Paradigm method)
get_string_value() (pyhrf.jde.beta.BetaSampler method)
(pyhrf.jde.jde_multi_sess.BiGaussMixtureParams_Multi_Sess_NRLsBar_Sampler method)
(pyhrf.jde.jde_multi_sujets_alpha.BiGaussMixtureParamsSampler method)
(pyhrf.jde.nrl.bigaussian.BiGaussMixtureParamsSampler method)
(pyhrf.jde.nrl.bigaussian_drift.BiGaussMixtureParams_Multi_Sess_NRLsBar_Sampler method)
(pyhrf.jde.samplerbase.GibbsSamplerVariable method)
get_summary() (pyhrf.jde.samplerbase.GibbsSamplerVariable method)
get_t_max() (pyhrf.paradigm.Paradigm method)
get_tmp_path() (in module pyhrf.core)
get_true_value() (pyhrf.jde.asl.DriftCoeffSampler method)
(pyhrf.jde.jde_multi_sess.Drift_MultiSess_Sampler method)
(pyhrf.jde.jde_multi_sujets.Drift_MultiSubj_Sampler method)
(pyhrf.jde.jde_multi_sujets.HRF_Group_Sampler method)
(pyhrf.jde.jde_multi_sujets.HRF_Sampler method)
(pyhrf.jde.jde_multi_sujets_alpha.Drift_MultiSubj_Sampler method)
(pyhrf.jde.samplerbase.GibbsSamplerVariable method)
get_true_value_for_check() (pyhrf.sandbox.stats.GSVariable method)
get_true_values_from_simulation_cdefs() (pyhrf.jde.asl.BOLDMixtureSampler method)
(pyhrf.jde.asl.PerfMixtureSampler method)
(pyhrf.jde.asl_physio.BOLDMixtureSampler method)
(pyhrf.jde.asl_physio.PerfMixtureSampler method)
(pyhrf.jde.asl_physio_1step.BOLDMixtureSampler method)
(pyhrf.jde.asl_physio_1step.PerfMixtureSampler method)
(pyhrf.jde.asl_physio_1step_params.BOLDMixtureSampler method)
(pyhrf.jde.asl_physio_1step_params.PerfMixtureSampler method)
(pyhrf.jde.asl_physio_det_fwdm.BOLDMixtureSampler method)
(pyhrf.jde.asl_physio_det_fwdm.PerfMixtureSampler method)
(pyhrf.jde.asl_physio_hierarchical.BOLDMixtureSampler method)
(pyhrf.jde.asl_physio_hierarchical.PerfMixtureSampler method)
(pyhrf.jde.asl_physio_joint.BOLDMixtureSampler method)
(pyhrf.jde.asl_physio_joint.PerfMixtureSampler method)
(pyhrf.jde.jde_multi_sujets.MixtureParamsSampler method)
(pyhrf.jde.jde_multi_sujets_alpha.MixtureParamsSampler method)
get_true_values_from_simulation_dict() (pyhrf.jde.asl.MixtureParamsSampler method)
(pyhrf.jde.asl_physio.MixtureParamsSampler method)
(pyhrf.jde.asl_physio_1step.MixtureParamsSampler method)
(pyhrf.jde.asl_physio_1step_params.MixtureParamsSampler method)
(pyhrf.jde.asl_physio_det_fwdm.MixtureParamsSampler method)
(pyhrf.jde.asl_physio_hierarchical.MixtureParamsSampler method)
(pyhrf.jde.asl_physio_joint.MixtureParamsSampler method)
get_value() (pyhrf.tools.misc.Pipeline method)
get_values() (pyhrf.tools.misc.Pipeline method)
get_variable() (pyhrf.jde.samplerbase.GibbsSampler method)
(pyhrf.jde.samplerbase.GibbsSamplerVariable method)
(pyhrf.sandbox.stats.GSVariable method)
(pyhrf.sandbox.stats.GibbsSampler method)
get_variable_value() (pyhrf.sandbox.stats.GibbsSampler method)
(pyhrf.sandbox.stats.GSVariable method)
get_voxel_size() (pyhrf.ndarray.xndarray method)
get_ybar() (pyhrf.jde.asl.ResponseSampler method)
(pyhrf.jde.asl_physio.ResponseSampler method)
(pyhrf.jde.asl_physio_1step.ResponseSampler method)
(pyhrf.jde.asl_physio_1step_params.ResponseSampler method)
(pyhrf.jde.asl_physio_det_fwdm.ResponseSampler method)
(pyhrf.jde.asl_physio_hierarchical.ResponseSampler method)
(pyhrf.jde.asl_physio_joint.ResponseSampler method)
getargspec() (in module pyhrf.xmliobak.xmlbase)
getCanoHRF() (in module pyhrf.boldsynth.hrf)
getCanoHRF_tderivative() (in module pyhrf.boldsynth.hrf)
getClassId() (pyhrf.boldsynth.spatialconfig.StateField method)
getClassifRate() (pyhrf.jde.nrl.bigaussian.NRLSampler method)
getClassName() (pyhrf.boldsynth.spatialconfig.StateField method)
getClassNames() (pyhrf.boldsynth.spatialconfig.StateField method)
getClosestNeighboursIndexes() (pyhrf.boldsynth.spatialconfig.RegularLatticeMapping method)
getCoord() (pyhrf.boldsynth.spatialconfig.RegularLatticeMapping method)
(pyhrf.boldsynth.spatialconfig.SpatialMapping method)
(pyhrf.boldsynth.spatialconfig.UnboundSpatialMapping method)
getCurrentMeans() (pyhrf.jde.jde_multi_sess.BiGaussMixtureParams_Multi_Sess_NRLsBar_Sampler method)
(pyhrf.jde.jde_multi_sujets_alpha.BiGaussMixtureParamsSampler method)
(pyhrf.jde.nrl.bigaussian.BiGaussMixtureParamsSampler method)
(pyhrf.jde.nrl.bigaussian_drift.BiGaussMixtureParams_Multi_Sess_NRLsBar_Sampler method)
(pyhrf.jde.nrl.trigaussian.TriGaussMixtureParamsSampler method)
getCurrentVar() (pyhrf.jde.hrf.HRF_two_parts_Sampler method)
(pyhrf.jde.hrf.HRFSampler method)
(pyhrf.jde.jde_multi_sess.HRF_MultiSess_Sampler method)
(pyhrf.jde.jde_multi_sujets.HRF_Group_Sampler method)
(pyhrf.jde.jde_multi_sujets.HRF_Sampler method)
(pyhrf.jde.jde_multi_sujets_alpha.HRF_Group_Sampler method)
(pyhrf.jde.jde_multi_sujets_alpha.HRF_Sampler method)
getCurrentVars() (pyhrf.jde.jde_multi_sess.BiGaussMixtureParams_Multi_Sess_NRLsBar_Sampler method)
(pyhrf.jde.jde_multi_sujets_alpha.BiGaussMixtureParamsSampler method)
(pyhrf.jde.nrl.bigaussian.BiGaussMixtureParamsSampler method)
(pyhrf.jde.nrl.bigaussian_drift.BiGaussMixtureParams_Multi_Sess_NRLsBar_Sampler method)
(pyhrf.jde.nrl.trigaussian.TriGaussMixtureParamsSampler method)
getFieldValues() (pyhrf.boldsynth.spatialconfig.StateField method)
getFinalLabels() (pyhrf.jde.nrl.bigaussian.NRLSampler method)
getFinalVar() (pyhrf.jde.hrf.HRF_two_parts_Sampler method)
(pyhrf.jde.hrf.HRFSampler method)
(pyhrf.jde.jde_multi_sess.HRF_MultiSess_Sampler method)
(pyhrf.jde.jde_multi_sujets.HRF_Group_Sampler method)
(pyhrf.jde.jde_multi_sujets.HRF_Sampler method)
(pyhrf.jde.jde_multi_sujets_alpha.HRF_Group_Sampler method)
(pyhrf.jde.jde_multi_sujets_alpha.HRF_Sampler method)
getFitAxes() (pyhrf.jde.samplerbase.GibbsSampler method)
getFunctionNames() (pyhrf.tools.aexpression.ArithmeticExpression method)
getGlobalOutputs() (pyhrf.jde.asl.ASLSampler method)
(pyhrf.jde.asl_physio.ASLPhysioSampler method)
(pyhrf.jde.asl_physio_1step.ASLPhysioSampler method)
(pyhrf.jde.asl_physio_1step_params.ASLPhysioSampler method)
(pyhrf.jde.asl_physio_det_fwdm.ASLPhysioSampler method)
(pyhrf.jde.asl_physio_hierarchical.ASLPhysioSampler method)
(pyhrf.jde.asl_physio_joint.ASLPhysioSampler method)
(pyhrf.jde.jde_multi_sess.BOLDGibbs_Multi_SessSampler method)
(pyhrf.jde.jde_multi_sujets.BOLDGibbs_Multi_SubjSampler method)
(pyhrf.jde.jde_multi_sujets_alpha.BOLDGibbs_Multi_SubjSampler method)
(pyhrf.jde.models.BOLDGibbsSampler method)
(pyhrf.jde.models.BOLDGibbsSampler_AR method)
(pyhrf.jde.samplerbase.GibbsSampler method)
getIndex() (pyhrf.boldsynth.spatialconfig.RegularLatticeMapping method)
(pyhrf.boldsynth.spatialconfig.SpatialMapping method)
(pyhrf.boldsynth.spatialconfig.UnboundSpatialMapping method)
getMappedFieldValues() (pyhrf.boldsynth.spatialconfig.StateField method)
getMapping() (pyhrf.boldsynth.spatialconfig.RegularLatticeMapping method)
(pyhrf.boldsynth.spatialconfig.SpatialMapping method)
(pyhrf.boldsynth.spatialconfig.UnboundSpatialMapping method)
getMaxIndex() (pyhrf.boldsynth.spatialconfig.NeighbourhoodSystem method)
getMaxNeighbours() (pyhrf.boldsynth.spatialconfig.NeighbourhoodSystem method)
getMean() (pyhrf.jde.samplerbase.GibbsSamplerVariable method)
getMeanHistory() (pyhrf.jde.samplerbase.GibbsSamplerVariable method)
getNbClasses() (pyhrf.boldsynth.spatialconfig.StateField method)
getNbCliques() (pyhrf.boldsynth.spatialconfig.RegularLatticeMapping method)
getNbVoxels() (pyhrf.boldsynth.spatialconfig.RegularLatticeMapping method)
(pyhrf.boldsynth.spatialconfig.SpatialMapping method)
(pyhrf.boldsynth.spatialconfig.UnboundSpatialMapping method)
getNdArrayMask() (pyhrf.boldsynth.spatialconfig.RegularLatticeMapping method)
(pyhrf.boldsynth.spatialconfig.SpatialMapping method)
(pyhrf.boldsynth.spatialconfig.UnboundSpatialMapping method)
getNeighbours() (pyhrf.boldsynth.spatialconfig.NeighbourhoodSystem method)
getNeighboursArrays() (pyhrf.boldsynth.spatialconfig.NeighbourhoodSystem method)
getNeighboursCoordLists() (pyhrf.boldsynth.spatialconfig.RegularLatticeMapping method)
(pyhrf.boldsynth.spatialconfig.SpatialMapping method)
(pyhrf.boldsynth.spatialconfig.UnboundSpatialMapping method)
getNeighboursCoords() (pyhrf.boldsynth.spatialconfig.RegularLatticeMapping method)
(pyhrf.boldsynth.spatialconfig.SpatialMapping method)
(pyhrf.boldsynth.spatialconfig.UnboundSpatialMapping method)
getNeighboursIndexes() (pyhrf.boldsynth.spatialconfig.RegularLatticeMapping method)
(pyhrf.boldsynth.spatialconfig.SpatialMapping method)
(pyhrf.boldsynth.spatialconfig.UnboundSpatialMapping method)
getNeighboursIndexLists() (pyhrf.boldsynth.spatialconfig.RegularLatticeMapping method)
(pyhrf.boldsynth.spatialconfig.SpatialMapping method)
(pyhrf.boldsynth.spatialconfig.UnboundSpatialMapping method)
getNeighboursLists() (pyhrf.boldsynth.spatialconfig.NeighbourhoodSystem method)
getNeighboursSets() (pyhrf.boldsynth.spatialconfig.NeighbourhoodSystem method)
getOutputs() (pyhrf.jde.asl.BOLDResponseLevelSampler method)
(pyhrf.jde.asl.ResponseLevelSampler method)
(pyhrf.jde.asl_physio.BOLDResponseLevelSampler method)
(pyhrf.jde.asl_physio.DriftCoeffSampler method)
(pyhrf.jde.asl_physio.ResponseSampler method)
(pyhrf.jde.asl_physio_1step.BOLDResponseLevelSampler method)
(pyhrf.jde.asl_physio_1step.DriftCoeffSampler method)
(pyhrf.jde.asl_physio_1step.ResponseSampler method)
(pyhrf.jde.asl_physio_1step_params.BOLDResponseLevelSampler method)
(pyhrf.jde.asl_physio_1step_params.DriftCoeffSampler method)
(pyhrf.jde.asl_physio_1step_params.ResponseSampler method)
(pyhrf.jde.asl_physio_det_fwdm.BOLDResponseLevelSampler method)
(pyhrf.jde.asl_physio_det_fwdm.DriftCoeffSampler method)
(pyhrf.jde.asl_physio_hierarchical.BOLDResponseLevelSampler method)
(pyhrf.jde.asl_physio_hierarchical.DriftCoeffSampler method)
(pyhrf.jde.asl_physio_hierarchical.ResponseSampler method)
(pyhrf.jde.asl_physio_joint.BOLDResponseLevelSampler method)
(pyhrf.jde.asl_physio_joint.DriftCoeffSampler method)
(pyhrf.jde.asl_physio_joint.ResponseSampler method)
(pyhrf.jde.beta.BetaSampler method)
(pyhrf.jde.drift.DriftSampler method)
(pyhrf.jde.drift.DriftSamplerWithRelVar method)
(pyhrf.jde.hrf.HRFSampler method)
(pyhrf.jde.hrf.HRF_two_parts_Sampler method)
(pyhrf.jde.hrf.RHSampler method)
(pyhrf.jde.hrf.ScaleSampler method)
(pyhrf.jde.jde_multi_sess.BiGaussMixtureParams_Multi_Sess_NRLsBar_Sampler method)
(pyhrf.jde.jde_multi_sess.Drift_MultiSess_Sampler method)
(pyhrf.jde.jde_multi_sess.HRF_MultiSess_Sampler method)
(pyhrf.jde.jde_multi_sess.NRL_Multi_Sess_Sampler method)
(pyhrf.jde.jde_multi_sujets.Drift_MultiSubj_Sampler method)
(pyhrf.jde.jde_multi_sujets.HRFVarianceSubjectSampler method)
(pyhrf.jde.jde_multi_sujets.HRF_Group_Sampler method)
(pyhrf.jde.jde_multi_sujets.HRF_Sampler method)
(pyhrf.jde.jde_multi_sujets.RHGroupSampler method)
(pyhrf.jde.jde_multi_sujets_alpha.BiGaussMixtureParamsSampler method)
(pyhrf.jde.jde_multi_sujets_alpha.Drift_MultiSubj_Sampler method)
(pyhrf.jde.jde_multi_sujets_alpha.HRFVarianceSubjectSampler method)
(pyhrf.jde.jde_multi_sujets_alpha.HRF_Group_Sampler method)
(pyhrf.jde.jde_multi_sujets_alpha.HRF_Sampler method)
(pyhrf.jde.jde_multi_sujets_alpha.RHGroupSampler method)
(pyhrf.jde.nrl.bigaussian.BiGaussMixtureParamsSampler method)
(pyhrf.jde.nrl.bigaussian.MixtureWeightsSampler method)
(pyhrf.jde.nrl.bigaussian.NRLSampler method)
(pyhrf.jde.nrl.bigaussian.NRL_Multi_Sess_Sampler method)
(pyhrf.jde.nrl.bigaussian_drift.BiGaussMixtureParams_Multi_Sess_NRLsBar_Sampler method)
(pyhrf.jde.nrl.habituation.NRLwithHabSampler method)
(pyhrf.jde.nrl.trigaussian.TriGaussMixtureParamsSampler method)
(pyhrf.jde.samplerbase.GibbsSampler method)
(pyhrf.jde.samplerbase.GibbsSamplerVariable method)
(pyhrf.jde.wsampler.WSampler method)
(pyhrf.jde.wsampler.W_Drift_Sampler method)
(pyhrf.rfir.RFIREstim method)
getPositions() (pyhrf.boldsynth.spatialconfig.SpatialMapping2 method)
getRocData() (pyhrf.jde.nrl.bigaussian.NRLSampler method)
getRoiMask() (pyhrf.boldsynth.spatialconfig.RegularLatticeMapping method)
(pyhrf.boldsynth.spatialconfig.SpatialMapping method)
(pyhrf.boldsynth.spatialconfig.UnboundSpatialMapping method)
getRotationMatrix() (in module pyhrf.boldsynth.spatialconfig)
getScaleFactor() (pyhrf.jde.hrf.HRF_two_parts_Sampler method)
(pyhrf.jde.hrf.HRFSampler method)
(pyhrf.jde.hrf.HRFwithHabSampler method)
(pyhrf.jde.jde_multi_sess.HRF_MultiSess_Sampler method)
(pyhrf.jde.jde_multi_sujets.HRF_Group_Sampler method)
(pyhrf.jde.jde_multi_sujets.HRF_Sampler method)
(pyhrf.jde.jde_multi_sujets_alpha.HRF_Group_Sampler method)
(pyhrf.jde.jde_multi_sujets_alpha.HRF_Sampler method)
getShortProfile() (pyhrf.jde.samplerbase.GibbsSampler method)
getSize() (pyhrf.boldsynth.spatialconfig.StateField method)
getSummary() (pyhrf.core.FmriData method)
(pyhrf.core.FmriGroupData method)
getTargetAxesNames() (pyhrf.boldsynth.spatialconfig.RegularLatticeMapping method)
getTinyProfile() (pyhrf.jde.samplerbase.GibbsSampler method)
getVariableNames() (pyhrf.tools.aexpression.ArithmeticExpression method)
GGGNRLSampler (class in pyhrf.jde.nrl.trigaussian)
GibbsSampler (class in pyhrf.jde.samplerbase)
(class in pyhrf.sandbox.stats)
GibbsSamplerVariable (class in pyhrf.jde.samplerbase)
GibbsTest (class in pyhrf.test.test_sampler)
GiftiTest (class in pyhrf.test.iotest)
GLM_method() (in module pyhrf.sandbox.parcellation)
glm_nipy() (in module pyhrf.glm)
glm_nipy_from_files() (in module pyhrf.glm)
GLMAnalyser (class in pyhrf.ui.glm_analyser)
(class in pyhrf.ui.glm_ui)
gm_cdf() (in module pyhrf.stats.misc)
gm_mean() (in module pyhrf.stats.misc)
gm_sample() (in module pyhrf.stats.random)
gm_var() (in module pyhrf.stats.misc)
grad_fun() (in module pyhrf.vbjde.vem_tools)
graph_from_lattice() (in module pyhrf.graph)
graph_from_lattice3D() (in module pyhrf.graph)
graph_from_mesh() (in module pyhrf.graph)
graph_is_sane() (in module pyhrf.graph)
graph_nb_cliques() (in module pyhrf.graph)
graph_pool_indexes() (in module pyhrf.graph)
graph_pygraph() (in module pyhrf.graph)
graph_to_sparse_matrix() (in module pyhrf.graph)
GraphBetaMix() (in module pyhrf.boldsynth.pottsfield.swendsenwang)
GraphTest (class in pyhrf.test.graphtest)
GraphToImage() (in module pyhrf.boldsynth.pottsfield.swendsenwang)
group_file_series() (in module pyhrf.tools.misc)
GSDefaultCallbackHandler (class in pyhrf.jde.samplerbase)
GSPrintCallbackHandler (class in pyhrf.jde.samplerbase)
GSVariable (class in pyhrf.sandbox.stats)
H
H_Entropy() (in module pyhrf.vbjde.vem_tools)
Hab_WN_BiG_BOLDSamplerInput (class in pyhrf.jde.models)
habitCondSampler() (pyhrf.jde.nrl.habituation.NRLwithHabSampler method)
habitCondSamplerParallel() (pyhrf.jde.nrl.habituation.NRLwithHabSampler method)
habitCondSamplerSerial() (pyhrf.jde.nrl.habituation.NRLwithHabSampler method)
has_attribute() (pyhrf.xmlio.UiNode method)
has_axes() (pyhrf.ndarray.xndarray method)
has_axis() (pyhrf.ndarray.xndarray method)
has_ext() (in module pyhrf.tools.misc)
hash_func_input() (in module pyhrf.tools.misc)
hashMask() (in module pyhrf.boldsynth.spatialconfig)
haveColor() (pyhrf.tools.message.MessageColor method)
(pyhrf.tools.message.MessageNoColor method)
(pyhrf.tools.message.NoMessage method)
hc_get_heads() (in module pyhrf.sandbox.parcellation)
HierarchicalTasksManager (class in pyhrf.grid)
Host (class in pyhrf.grid)
hosts_help() (in module pyhrf.grid)
HostsManager (class in pyhrf.grid)
hrf_canonical_derivatives() (in module pyhrf.sandbox.parcellation)
HRF_Drift_Sampler (class in pyhrf.jde.hrf)
HRF_Drift_SamplerWithRelVar (class in pyhrf.jde.hrf)
hrf_entropy() (in module pyhrf.vbjde.vem_tools)
hrf_expectation() (in module pyhrf.vbjde.vem_tools)
HRF_Group_Sampler (class in pyhrf.jde.jde_multi_sujets)
(class in pyhrf.jde.jde_multi_sujets_alpha)
HRF_MultiSess_Sampler (class in pyhrf.jde.jde_multi_sess)
HRF_Sampler (class in pyhrf.jde.jde_multi_sujets)
(class in pyhrf.jde.jde_multi_sujets_alpha)
HRF_two_parts_Sampler (class in pyhrf.jde.hrf)
HRFARSampler (class in pyhrf.jde.hrf)
HRFSampler (class in pyhrf.jde.hrf)
HRFSamplerWithRelVar (class in pyhrf.jde.hrf)
HRFVarianceSubjectSampler (class in pyhrf.jde.jde_multi_sujets)
(class in pyhrf.jde.jde_multi_sujets_alpha)
HRFwithHabSampler (class in pyhrf.jde.hrf)
html_body() (in module pyhrf.tools.misc)
html_cell() (in module pyhrf.tools.misc)
html_div() (in module pyhrf.tools.misc)
html_doc() (in module pyhrf.tools.misc)
html_head() (in module pyhrf.tools.misc)
html_img() (in module pyhrf.tools.misc)
html_list_to_row() (in module pyhrf.tools.misc)
html_row() (in module pyhrf.tools.misc)
html_style() (in module pyhrf.tools.misc)
html_table() (in module pyhrf.tools.misc)
I
I_MEAN_CA (pyhrf.jde.asl.MixtureParamsSampler attribute)
(pyhrf.jde.asl_physio.MixtureParamsSampler attribute)
(pyhrf.jde.asl_physio_1step.MixtureParamsSampler attribute)
(pyhrf.jde.asl_physio_1step_params.MixtureParamsSampler attribute)
(pyhrf.jde.asl_physio_det_fwdm.MixtureParamsSampler attribute)
(pyhrf.jde.asl_physio_hierarchical.MixtureParamsSampler attribute)
(pyhrf.jde.asl_physio_joint.MixtureParamsSampler attribute)
(pyhrf.jde.jde_multi_sess.BiGaussMixtureParams_Multi_Sess_NRLsBar_Sampler attribute)
(pyhrf.jde.jde_multi_sujets.MixtureParamsSampler attribute)
(pyhrf.jde.jde_multi_sujets_alpha.BiGaussMixtureParamsSampler attribute)
(pyhrf.jde.jde_multi_sujets_alpha.MixtureParamsSampler attribute)
(pyhrf.jde.nrl.bigaussian.BiGaussMixtureParamsSampler attribute)
(pyhrf.jde.nrl.bigaussian_drift.BiGaussMixtureParams_Multi_Sess_NRLsBar_Sampler attribute)
(pyhrf.jde.nrl.gammagaussian.GamGaussMixtureParamsSampler attribute)
I_MEAN_CD (pyhrf.jde.nrl.trigaussian.TriGaussMixtureParamsSampler attribute)
I_VAR_CA (pyhrf.jde.asl.MixtureParamsSampler attribute)
(pyhrf.jde.asl_physio.MixtureParamsSampler attribute)
(pyhrf.jde.asl_physio_1step.MixtureParamsSampler attribute)
(pyhrf.jde.asl_physio_1step_params.MixtureParamsSampler attribute)
(pyhrf.jde.asl_physio_det_fwdm.MixtureParamsSampler attribute)
(pyhrf.jde.asl_physio_hierarchical.MixtureParamsSampler attribute)
(pyhrf.jde.asl_physio_joint.MixtureParamsSampler attribute)
(pyhrf.jde.jde_multi_sess.BiGaussMixtureParams_Multi_Sess_NRLsBar_Sampler attribute)
(pyhrf.jde.jde_multi_sujets.MixtureParamsSampler attribute)
(pyhrf.jde.jde_multi_sujets_alpha.BiGaussMixtureParamsSampler attribute)
(pyhrf.jde.jde_multi_sujets_alpha.MixtureParamsSampler attribute)
(pyhrf.jde.nrl.bigaussian.BiGaussMixtureParamsSampler attribute)
(pyhrf.jde.nrl.bigaussian_drift.BiGaussMixtureParams_Multi_Sess_NRLsBar_Sampler attribute)
(pyhrf.jde.nrl.gammagaussian.GamGaussMixtureParamsSampler attribute)
I_VAR_CD (pyhrf.jde.nrl.trigaussian.TriGaussMixtureParamsSampler attribute)
I_VAR_CI (pyhrf.jde.asl.MixtureParamsSampler attribute)
(pyhrf.jde.asl_physio.MixtureParamsSampler attribute)
(pyhrf.jde.asl_physio_1step.MixtureParamsSampler attribute)
(pyhrf.jde.asl_physio_1step_params.MixtureParamsSampler attribute)
(pyhrf.jde.asl_physio_det_fwdm.MixtureParamsSampler attribute)
(pyhrf.jde.asl_physio_hierarchical.MixtureParamsSampler attribute)
(pyhrf.jde.asl_physio_joint.MixtureParamsSampler attribute)
(pyhrf.jde.jde_multi_sess.BiGaussMixtureParams_Multi_Sess_NRLsBar_Sampler attribute)
(pyhrf.jde.jde_multi_sujets.MixtureParamsSampler attribute)
(pyhrf.jde.jde_multi_sujets_alpha.BiGaussMixtureParamsSampler attribute)
(pyhrf.jde.jde_multi_sujets_alpha.MixtureParamsSampler attribute)
(pyhrf.jde.nrl.bigaussian.BiGaussMixtureParamsSampler attribute)
(pyhrf.jde.nrl.bigaussian_drift.BiGaussMixtureParams_Multi_Sess_NRLsBar_Sampler attribute)
(pyhrf.jde.nrl.gammagaussian.GamGaussMixtureParamsSampler attribute)
icartesian_combine_args() (in module pyhrf.tools.misc)
ImageToGraph() (in module pyhrf.boldsynth.pottsfield.swendsenwang)
includeTagDOMReader() (pyhrf.xmliobak.xmlbase.TypedXMLHandler static method)
IndependentMixtureLaw (class in pyhrf.stats.random)
info() (pyhrf.tools.message.MessageColor class method)
(pyhrf.tools.message.MessageNoColor class method)
(pyhrf.tools.message.NoMessage method)
informedGMM() (in module pyhrf.sandbox.parcellation)
informedGMM_MV() (in module pyhrf.sandbox.parcellation)
InhomogeneousNRLSampler (class in pyhrf.jde.nrl.gammagaussian)
init() (pyhrf.grid.TaskHierarchical method)
init_contrasts() (pyhrf.jde.nrl.bigaussian.NRLSampler method)
init_dependencies() (pyhrf.tools.misc.Pipeline method)
init_dict() (in module pyhrf.rfir)
init_edge_data() (in module pyhrf.parcellation)
init_new_obj() (pyhrf.xmlio.Initable method)
init_observables() (pyhrf.sandbox.stats.GSVariable method)
init_sampling() (pyhrf.sandbox.stats.GSVariable method)
Initable (class in pyhrf.xmlio)
InitableTest (class in pyhrf.test.test_xml)
initGlobalObservables() (pyhrf.jde.jde_multi_sess.BOLDGibbs_Multi_SessSampler method)
(pyhrf.jde.jde_multi_sujets.BOLDGibbs_Multi_SubjSampler method)
(pyhrf.jde.jde_multi_sujets_alpha.BOLDGibbs_Multi_SubjSampler method)
(pyhrf.jde.models.BOLDGibbsSampler method)
(pyhrf.jde.models.BOLDGibbsSampler_AR method)
(pyhrf.jde.samplerbase.GibbsSampler method)
InitMatrixAndVectors() (pyhrf.rfir.RFIREstim method)
initObservables() (pyhrf.jde.hrf.HRF_two_parts_Sampler method)
(pyhrf.jde.hrf.HRFSampler method)
(pyhrf.jde.jde_multi_sess.HRF_MultiSess_Sampler method)
(pyhrf.jde.jde_multi_sujets.HRF_Sampler method)
(pyhrf.jde.jde_multi_sujets_alpha.HRF_Sampler method)
(pyhrf.jde.nrl.bigaussian.NRLSampler method)
(pyhrf.jde.nrl.habituation.NRLwithHabSampler method)
(pyhrf.jde.samplerbase.GibbsSamplerVariable method)
(pyhrf.jde.wsampler.WSampler method)
(pyhrf.jde.wsampler.W_Drift_Sampler method)
initOutputs2() (pyhrf.jde.drift.DriftARSampler method)
InitStorageMat() (pyhrf.rfir.RFIREstim method)
inputClass (pyhrf.jde.asl.ASLSampler attribute)
(pyhrf.jde.asl_physio.ASLPhysioSampler attribute)
(pyhrf.jde.asl_physio_1step.ASLPhysioSampler attribute)
(pyhrf.jde.asl_physio_1step_params.ASLPhysioSampler attribute)
(pyhrf.jde.asl_physio_det_fwdm.ASLPhysioSampler attribute)
(pyhrf.jde.asl_physio_hierarchical.ASLPhysioSampler attribute)
(pyhrf.jde.asl_physio_joint.ASLPhysioSampler attribute)
(pyhrf.jde.jde_multi_sess.BOLDGibbs_Multi_SessSampler attribute)
(pyhrf.jde.jde_multi_sujets.BOLDGibbs_Multi_SubjSampler attribute)
(pyhrf.jde.jde_multi_sujets_alpha.BOLDGibbs_Multi_SubjSampler attribute)
(pyhrf.jde.models.BOLDGibbsSampler attribute)
(pyhrf.jde.models.BOLDGibbsSampler_AR attribute)
(pyhrf.jde.models.Drift_BOLDGibbsSampler attribute)
(pyhrf.jde.models.W_BOLDGibbsSampler attribute)
(pyhrf.jde.models.W_Drift_BOLDGibbsSampler attribute)
inspect_and_append_to_DOM_tree() (pyhrf.xmliobak.xmlbase.TypedXMLHandler method)
inspect_default_args() (in module pyhrf.tools.misc)
inspectable() (pyhrf.xmliobak.xmlbase.TypedXMLHandler method)
int16DOMWriter() (pyhrf.xmliobak.xmlnumpy.NumpyXMLHandler static method)
int16TagDOMReader() (pyhrf.xmliobak.xmlnumpy.NumpyXMLHandler static method)
intDOMWriter() (pyhrf.xmliobak.xmlbase.TypedXMLHandler static method)
intTagDOMReader() (pyhrf.xmliobak.xmlbase.TypedXMLHandler static method)
is_accurate() (pyhrf.jde.jde_multi_sess.NRL_Multi_Sess_Sampler method)
(pyhrf.jde.jde_multi_sess.NRLsBar_Drift_Multi_Sess_Sampler method)
is_importable() (in module pyhrf.tools.misc)
is_inside() (pyhrf.grid.TimeSlot method)
(pyhrf.grid.TimeSlotList method)
is_inside_now() (pyhrf.grid.TimeSlot method)
is_leaf_node() (pyhrf.xmlio.UiNode method)
is_tmp_file() (in module pyhrf.validation.config)
isExpendable() (pyhrf.boldsynth.spatialconfig.xndarrayMapper1D method)
isFlattenable() (pyhrf.boldsynth.spatialconfig.xndarrayMapper1D method)
isup() (pyhrf.grid.HostsManager method)
items() (pyhrf.tools.backports.OrderedDict method)
iterate_sampling() (pyhrf.jde.samplerbase.GibbsSampler method)
(pyhrf.sandbox.stats.GibbsSampler method)
iteritems() (pyhrf.tools.backports.OrderedDict method)
iterkeys() (pyhrf.tools.backports.OrderedDict method)
itervalues() (pyhrf.tools.backports.OrderedDict method)
J
jde_analyse() (in module pyhrf.ui.jde)
jde_analyse_2steps_v1() (in module pyhrf.jde.asl_2steps)
jde_surf_from_files() (in module pyhrf.ui.treatment)
jde_vem_bold() (in module pyhrf.vbjde.vem_bold)
jde_vol_from_files() (in module pyhrf.ui.treatment)
JDEAnalyser (class in pyhrf.ui.jde)
JDEMCMCAnalyser (class in pyhrf.ui.jde)
JDETest (class in pyhrf.test.jdetest)
(class in pyhrf.validation.valid_jde_bold_mono_subj_sess)
JDEVEMAnalyser (class in pyhrf.ui.vb_jde_analyser)
(class in pyhrf.ui.vb_jde_analyser_asl_fast)
(class in pyhrf.ui.vb_jde_analyser_bold_fast)
join_sessions() (pyhrf.paradigm.Paradigm method)
joinOutputs() (pyhrf.ui.analyser_ui.FMRIAnalyser method)
K
keep_only_rois() (pyhrf.core.FmriData method)
kerMask2D_4n (pyhrf.boldsynth.spatialconfig.NeighbourhoodSystem attribute)
kerMask3D_6n (pyhrf.boldsynth.spatialconfig.NeighbourhoodSystem attribute)
key() (pyhrf.grid.User method)
keys() (pyhrf.tools.backports.OrderedDict method)
kill() (pyhrf.grid.TasksStarter method)
kill_threads() (in module pyhrf.grid)
L
L_CA (pyhrf.jde.asl.LabelSampler attribute)
(pyhrf.jde.asl.MixtureParamsSampler attribute)
(pyhrf.jde.asl_physio.LabelSampler attribute)
(pyhrf.jde.asl_physio.MixtureParamsSampler attribute)
(pyhrf.jde.asl_physio_1step.LabelSampler attribute)
(pyhrf.jde.asl_physio_1step.MixtureParamsSampler attribute)
(pyhrf.jde.asl_physio_1step_params.LabelSampler attribute)
(pyhrf.jde.asl_physio_1step_params.MixtureParamsSampler attribute)
(pyhrf.jde.asl_physio_det_fwdm.LabelSampler attribute)
(pyhrf.jde.asl_physio_det_fwdm.MixtureParamsSampler attribute)
(pyhrf.jde.asl_physio_hierarchical.LabelSampler attribute)
(pyhrf.jde.asl_physio_hierarchical.MixtureParamsSampler attribute)
(pyhrf.jde.asl_physio_joint.LabelSampler attribute)
(pyhrf.jde.asl_physio_joint.MixtureParamsSampler attribute)
(pyhrf.jde.jde_multi_sess.BiGaussMixtureParams_Multi_Sess_NRLsBar_Sampler attribute)
(pyhrf.jde.jde_multi_sujets.LabelSampler attribute)
(pyhrf.jde.jde_multi_sujets.MixtureParamsSampler attribute)
(pyhrf.jde.jde_multi_sujets_alpha.BiGaussMixtureParamsSampler attribute)
(pyhrf.jde.jde_multi_sujets_alpha.LabelSampler attribute)
(pyhrf.jde.jde_multi_sujets_alpha.MixtureParamsSampler attribute)
(pyhrf.jde.jde_multi_sujets_alpha.NRLs_Sampler attribute)
(pyhrf.jde.nrl.bigaussian.BiGaussMixtureParamsSampler attribute)
(pyhrf.jde.nrl.bigaussian.NRLSampler attribute)
(pyhrf.jde.nrl.bigaussian_drift.BiGaussMixtureParams_Multi_Sess_NRLsBar_Sampler attribute)
(pyhrf.jde.nrl.gammagaussian.InhomogeneousNRLSampler attribute)
(pyhrf.jde.nrl.trigaussian.GGGNRLSampler attribute)
(pyhrf.jde.wsampler.WSampler attribute)
(pyhrf.jde.wsampler.W_Drift_Sampler attribute)
L_CD (pyhrf.jde.nrl.trigaussian.GGGNRLSampler attribute)
(pyhrf.jde.nrl.trigaussian.TriGaussMixtureParamsSampler attribute)
L_CI (pyhrf.jde.asl.LabelSampler attribute)
(pyhrf.jde.asl.MixtureParamsSampler attribute)
(pyhrf.jde.asl_physio.LabelSampler attribute)
(pyhrf.jde.asl_physio.MixtureParamsSampler attribute)
(pyhrf.jde.asl_physio_1step.LabelSampler attribute)
(pyhrf.jde.asl_physio_1step.MixtureParamsSampler attribute)
(pyhrf.jde.asl_physio_1step_params.LabelSampler attribute)
(pyhrf.jde.asl_physio_1step_params.MixtureParamsSampler attribute)
(pyhrf.jde.asl_physio_det_fwdm.LabelSampler attribute)
(pyhrf.jde.asl_physio_det_fwdm.MixtureParamsSampler attribute)
(pyhrf.jde.asl_physio_hierarchical.LabelSampler attribute)
(pyhrf.jde.asl_physio_hierarchical.MixtureParamsSampler attribute)
(pyhrf.jde.asl_physio_joint.LabelSampler attribute)
(pyhrf.jde.asl_physio_joint.MixtureParamsSampler attribute)
(pyhrf.jde.jde_multi_sess.BiGaussMixtureParams_Multi_Sess_NRLsBar_Sampler attribute)
(pyhrf.jde.jde_multi_sujets.LabelSampler attribute)
(pyhrf.jde.jde_multi_sujets.MixtureParamsSampler attribute)
(pyhrf.jde.jde_multi_sujets_alpha.BiGaussMixtureParamsSampler attribute)
(pyhrf.jde.jde_multi_sujets_alpha.LabelSampler attribute)
(pyhrf.jde.jde_multi_sujets_alpha.MixtureParamsSampler attribute)
(pyhrf.jde.jde_multi_sujets_alpha.NRLs_Sampler attribute)
(pyhrf.jde.nrl.bigaussian.BiGaussMixtureParamsSampler attribute)
(pyhrf.jde.nrl.bigaussian.NRLSampler attribute)
(pyhrf.jde.nrl.bigaussian_drift.BiGaussMixtureParams_Multi_Sess_NRLsBar_Sampler attribute)
(pyhrf.jde.nrl.gammagaussian.InhomogeneousNRLSampler attribute)
(pyhrf.jde.nrl.trigaussian.GGGNRLSampler attribute)
(pyhrf.jde.wsampler.WSampler attribute)
(pyhrf.jde.wsampler.W_Drift_Sampler attribute)
label() (pyhrf.xmlio.UiNode method)
labels_ (pyhrf.sandbox.parcellation.Ward attribute)
(pyhrf.sandbox.parcellation.WardAgglomeration attribute)
labels_entropy() (in module pyhrf.vbjde.vem_tools)
labels_expectation() (in module pyhrf.vbjde.vem_tools)
LabelSampler (class in pyhrf.jde.asl)
(class in pyhrf.jde.asl_physio)
(class in pyhrf.jde.asl_physio_1step)
(class in pyhrf.jde.asl_physio_1step_params)
(class in pyhrf.jde.asl_physio_det_fwdm)
(class in pyhrf.jde.asl_physio_hierarchical)
(class in pyhrf.jde.asl_physio_joint)
(class in pyhrf.jde.jde_multi_sujets)
(class in pyhrf.jde.jde_multi_sujets_alpha)
LaplacianPdf() (in module pyhrf.jde.nrl.habituation)
lattice_indexes() (in module pyhrf.boldsynth.spatialconfig)
len() (pyhrf.ndarray.xndarray method)
linear_rf_operator() (in module pyhrf.sandbox.physio)
(in module pyhrf.sandbox.physio_params)
linkNodes() (in module pyhrf.boldsynth.pottsfield.swendsenwang)
linkNodesSets() (in module pyhrf.boldsynth.pottsfield.swendsenwang)
linkToData() (pyhrf.jde.asl.DriftCoeffSampler method)
(pyhrf.jde.asl.DriftVarianceSampler method)
(pyhrf.jde.asl.LabelSampler method)
(pyhrf.jde.asl.MixtureParamsSampler method)
(pyhrf.jde.asl.NoiseVarianceSampler method)
(pyhrf.jde.asl.PerfBaselineSampler method)
(pyhrf.jde.asl.PerfBaselineVarianceSampler method)
(pyhrf.jde.asl.ResponseLevelSampler method)
(pyhrf.jde.asl.ResponseSampler method)
(pyhrf.jde.asl.ResponseVarianceSampler method)
(pyhrf.jde.asl_physio.DriftCoeffSampler method)
(pyhrf.jde.asl_physio.DriftVarianceSampler method)
(pyhrf.jde.asl_physio.LabelSampler method)
(pyhrf.jde.asl_physio.MixtureParamsSampler method)
(pyhrf.jde.asl_physio.NoiseVarianceSampler method)
(pyhrf.jde.asl_physio.PerfBaselineSampler method)
(pyhrf.jde.asl_physio.PerfBaselineVarianceSampler method)
(pyhrf.jde.asl_physio.ResponseLevelSampler method)
(pyhrf.jde.asl_physio.ResponseSampler method)
(pyhrf.jde.asl_physio.ResponseVarianceSampler method)
(pyhrf.jde.asl_physio_1step.DriftCoeffSampler method)
(pyhrf.jde.asl_physio_1step.DriftVarianceSampler method)
(pyhrf.jde.asl_physio_1step.LabelSampler method)
(pyhrf.jde.asl_physio_1step.MixtureParamsSampler method)
(pyhrf.jde.asl_physio_1step.NoiseVarianceSampler method)
(pyhrf.jde.asl_physio_1step.PerfBaselineSampler method)
(pyhrf.jde.asl_physio_1step.PerfBaselineVarianceSampler method)
(pyhrf.jde.asl_physio_1step.ResponseLevelSampler method)
(pyhrf.jde.asl_physio_1step.ResponseSampler method)
(pyhrf.jde.asl_physio_1step.ResponseVarianceSampler method)
(pyhrf.jde.asl_physio_1step_params.DriftCoeffSampler method)
(pyhrf.jde.asl_physio_1step_params.DriftVarianceSampler method)
(pyhrf.jde.asl_physio_1step_params.LabelSampler method)
(pyhrf.jde.asl_physio_1step_params.MixtureParamsSampler method)
(pyhrf.jde.asl_physio_1step_params.NoiseVarianceSampler method)
(pyhrf.jde.asl_physio_1step_params.PerfBaselineSampler method)
(pyhrf.jde.asl_physio_1step_params.PerfBaselineVarianceSampler method)
(pyhrf.jde.asl_physio_1step_params.ResponseLevelSampler method)
(pyhrf.jde.asl_physio_1step_params.ResponseSampler method)
(pyhrf.jde.asl_physio_1step_params.ResponseVarianceSampler method)
(pyhrf.jde.asl_physio_det_fwdm.DriftCoeffSampler method)
(pyhrf.jde.asl_physio_det_fwdm.DriftVarianceSampler method)
(pyhrf.jde.asl_physio_det_fwdm.LabelSampler method)
(pyhrf.jde.asl_physio_det_fwdm.MixtureParamsSampler method)
(pyhrf.jde.asl_physio_det_fwdm.NoiseVarianceSampler method)
(pyhrf.jde.asl_physio_det_fwdm.PerfBaselineSampler method)
(pyhrf.jde.asl_physio_det_fwdm.PerfBaselineVarianceSampler method)
(pyhrf.jde.asl_physio_det_fwdm.ResponseLevelSampler method)
(pyhrf.jde.asl_physio_det_fwdm.ResponseSampler method)
(pyhrf.jde.asl_physio_det_fwdm.ResponseVarianceSampler method)
(pyhrf.jde.asl_physio_hierarchical.DriftCoeffSampler method)
(pyhrf.jde.asl_physio_hierarchical.DriftVarianceSampler method)
(pyhrf.jde.asl_physio_hierarchical.LabelSampler method)
(pyhrf.jde.asl_physio_hierarchical.MixtureParamsSampler method)
(pyhrf.jde.asl_physio_hierarchical.NoiseVarianceSampler method)
(pyhrf.jde.asl_physio_hierarchical.PerfBaselineSampler method)
(pyhrf.jde.asl_physio_hierarchical.PerfBaselineVarianceSampler method)
(pyhrf.jde.asl_physio_hierarchical.PhysioBOLDResponseVarianceSampler method)
(pyhrf.jde.asl_physio_hierarchical.PhysioPerfResponseVarianceSampler method)
(pyhrf.jde.asl_physio_hierarchical.PhysioTrueBOLDResponseVarianceSampler method)
(pyhrf.jde.asl_physio_hierarchical.ResponseLevelSampler method)
(pyhrf.jde.asl_physio_hierarchical.ResponseSampler method)
(pyhrf.jde.asl_physio_joint.DriftCoeffSampler method)
(pyhrf.jde.asl_physio_joint.DriftVarianceSampler method)
(pyhrf.jde.asl_physio_joint.LabelSampler method)
(pyhrf.jde.asl_physio_joint.MixtureParamsSampler method)
(pyhrf.jde.asl_physio_joint.NoiseVarianceSampler method)
(pyhrf.jde.asl_physio_joint.PerfBaselineSampler method)
(pyhrf.jde.asl_physio_joint.PerfBaselineVarianceSampler method)
(pyhrf.jde.asl_physio_joint.PhysioJointResponseVarianceSampler method)
(pyhrf.jde.asl_physio_joint.ResponseLevelSampler method)
(pyhrf.jde.asl_physio_joint.ResponseSampler method)
(pyhrf.jde.beta.BetaSampler method)
(pyhrf.jde.drift.DriftARSampler method)
(pyhrf.jde.drift.DriftSampler method)
(pyhrf.jde.drift.DriftSamplerWithRelVar method)
(pyhrf.jde.drift.ETASampler method)
(pyhrf.jde.drift.ETASampler_MultiSess method)
(pyhrf.jde.hrf.HRFARSampler method)
(pyhrf.jde.hrf.HRFSampler method)
(pyhrf.jde.hrf.HRFSamplerWithRelVar method)
(pyhrf.jde.hrf.HRF_two_parts_Sampler method)
(pyhrf.jde.hrf.HRFwithHabSampler method)
(pyhrf.jde.hrf.RHSampler method)
(pyhrf.jde.hrf.ScaleSampler method)
(pyhrf.jde.jde_multi_sess.BiGaussMixtureParams_Multi_Sess_NRLsBar_Sampler method)
(pyhrf.jde.jde_multi_sess.Drift_MultiSess_Sampler method)
(pyhrf.jde.jde_multi_sess.ETASampler_MultiSess method)
(pyhrf.jde.jde_multi_sess.HRF_MultiSess_Sampler method)
(pyhrf.jde.jde_multi_sess.NRL_Multi_Sess_Sampler method)
(pyhrf.jde.jde_multi_sess.NRLsBar_Drift_Multi_Sess_Sampler method)
(pyhrf.jde.jde_multi_sess.NoiseVariance_Drift_Multi_Sess_Sampler method)
(pyhrf.jde.jde_multi_sess.Variance_GaussianNRL_Multi_Sess method)
(pyhrf.jde.jde_multi_sujets.Drift_MultiSubj_Sampler method)
(pyhrf.jde.jde_multi_sujets.ETASampler_MultiSubj method)
(pyhrf.jde.jde_multi_sujets.HRFVarianceSubjectSampler method)
(pyhrf.jde.jde_multi_sujets.HRF_Group_Sampler method)
(pyhrf.jde.jde_multi_sujets.HRF_Sampler method)
(pyhrf.jde.jde_multi_sujets.LabelSampler method)
(pyhrf.jde.jde_multi_sujets.MixtureParamsSampler method)
(pyhrf.jde.jde_multi_sujets.NRLs_Sampler method)
(pyhrf.jde.jde_multi_sujets.NoiseVariance_Drift_MultiSubj_Sampler method)
(pyhrf.jde.jde_multi_sujets.RHGroupSampler method)
(pyhrf.jde.jde_multi_sujets.Variance_GaussianNRL_Multi_Subj method)
(pyhrf.jde.jde_multi_sujets_alpha.AlphaVar_Sampler method)
(pyhrf.jde.jde_multi_sujets_alpha.Alpha_hgroup_Sampler method)
(pyhrf.jde.jde_multi_sujets_alpha.BiGaussMixtureParamsSampler method)
(pyhrf.jde.jde_multi_sujets_alpha.Drift_MultiSubj_Sampler method)
(pyhrf.jde.jde_multi_sujets_alpha.ETASampler_MultiSubj method)
(pyhrf.jde.jde_multi_sujets_alpha.HRFVarianceSubjectSampler method)
(pyhrf.jde.jde_multi_sujets_alpha.HRF_Group_Sampler method)
(pyhrf.jde.jde_multi_sujets_alpha.HRF_Sampler method)
(pyhrf.jde.jde_multi_sujets_alpha.LabelSampler method)
(pyhrf.jde.jde_multi_sujets_alpha.MixtureParamsSampler method)
(pyhrf.jde.jde_multi_sujets_alpha.NRLs_Sampler method)
(pyhrf.jde.jde_multi_sujets_alpha.NoiseVariance_Drift_MultiSubj_Sampler method)
(pyhrf.jde.jde_multi_sujets_alpha.RHGroupSampler method)
(pyhrf.jde.jde_multi_sujets_alpha.Variance_GaussianNRL_Multi_Subj method)
(pyhrf.jde.noise.NoiseARParamsSampler method)
(pyhrf.jde.noise.NoiseVarianceSampler method)
(pyhrf.jde.noise.NoiseVariance_Drift_Sampler method)
(pyhrf.jde.nrl.ar.NRLARSampler method)
(pyhrf.jde.nrl.bigaussian.BiGaussMixtureParamsSampler method)
(pyhrf.jde.nrl.bigaussian.MixtureWeightsSampler method)
(pyhrf.jde.nrl.bigaussian.NRLSampler method)
(pyhrf.jde.nrl.bigaussian.NRL_Multi_Sess_Sampler method)
(pyhrf.jde.nrl.bigaussian.Variance_GaussianNRL_Multi_Sess method)
(pyhrf.jde.nrl.bigaussian_drift.BiGaussMixtureParams_Multi_Sess_NRLsBar_Sampler method)
(pyhrf.jde.nrl.bigaussian_drift.NRLsBar_Drift_Multi_Sess_Sampler method)
(pyhrf.jde.nrl.gammagaussian.GamGaussMixtureParamsSampler method)
(pyhrf.jde.nrl.gammagaussian.InhomogeneousNRLSampler method)
(pyhrf.jde.nrl.habituation.NRLwithHabSampler method)
(pyhrf.jde.nrl.trigaussian.TriGaussMixtureParamsSampler method)
(pyhrf.jde.samplerbase.GibbsSampler method)
(pyhrf.jde.samplerbase.GibbsSamplerVariable method)
(pyhrf.jde.wsampler.WSampler method)
(pyhrf.jde.wsampler.W_Drift_Sampler method)
(pyhrf.rfir.RFIREstim method)
list_data_file_names() (in module pyhrf.core)
listDOMWriter() (pyhrf.xmliobak.xmlbase.TypedXMLHandler static method)
listTagDOMReader() (pyhrf.xmliobak.xmlbase.TypedXMLHandler static method)
load() (pyhrf.ndarray.xndarray static method)
load_configuration() (in module pyhrf.configuration)
load_drawn_labels() (in module pyhrf.boldsynth.scenarios)
load_hrf_territories() (in module pyhrf.boldsynth.scenarios)
load_many_hrf_territories() (in module pyhrf.boldsynth.scenarios)
load_surf_bold_mask() (in module pyhrf.core)
load_vol_bold_and_mask() (in module pyhrf.core)
LoadBaseLogPartFctRef() (in module pyhrf.jde.beta)
loadBetaGrid() (pyhrf.jde.beta.BetaSampler method)
log() (pyhrf.xmlio.UiNode method)
log_help() (in module pyhrf.grid)
logger (in module pyhrf.vbjde.vem_bold)
loglikelihood_computation() (in module pyhrf.sandbox.parcellation)
LogNormalGenerator (class in pyhrf.stats.random)
logpf_ising_onsager() (in module pyhrf.jde.beta)
M
main() (in module pyhrf.grid)
main_safe() (in module pyhrf.grid)
Main_vbjde_Extension_constrained() (in module pyhrf.vbjde.vem_bold_constrained)
Main_vbjde_Extension_constrained_stable() (in module pyhrf.vbjde.vem_bold_constrained)
Main_vbjde_physio() (in module pyhrf.vbjde.vem_asl_models_fast)
(in module pyhrf.vbjde.vem_asl_models_fast_ms)
(in module pyhrf.vbjde.vem_bold_models_fast)
(in module pyhrf.vbjde.vem_bold_models_fast_ms)
Main_vbjde_Python_constrained() (in module pyhrf.vbjde.vem_bold_constrained)
make_mask() (in module pyhrf.sandbox.make_parcellation)
make_outfile() (in module pyhrf.ui.treatment)
make_outputs_multi_subjects() (pyhrf.ui.analyser_ui.FMRIAnalyser method)
make_outputs_single_subject() (pyhrf.ui.analyser_ui.FMRIAnalyser method)
make_parcellation() (in module pyhrf.sandbox.make_parcellation)
make_parcellation_cubed_blobs_from_file() (in module pyhrf.parcellation)
make_parcellation_from_files() (in module pyhrf.parcellation)
make_parcellation_surf_from_files() (in module pyhrf.parcellation)
makePrecalculations() (pyhrf.jde.asl.WN_BiG_ASLSamplerInput method)
(pyhrf.jde.asl_physio.WN_BiG_ASLSamplerInput method)
(pyhrf.jde.asl_physio_1step.WN_BiG_ASLSamplerInput method)
(pyhrf.jde.asl_physio_1step_params.WN_BiG_ASLSamplerInput method)
(pyhrf.jde.asl_physio_det_fwdm.WN_BiG_ASLSamplerInput method)
(pyhrf.jde.asl_physio_hierarchical.WN_BiG_ASLSamplerInput method)
(pyhrf.jde.asl_physio_joint.WN_BiG_ASLSamplerInput method)
(pyhrf.jde.jde_multi_sess.BOLDSampler_Multi_SessInput method)
(pyhrf.jde.jde_multi_sujets.BOLDSampler_MultiSujInput method)
(pyhrf.jde.jde_multi_sujets_alpha.BOLDSampler_MultiSujInput method)
(pyhrf.jde.models.ARN_BiG_BOLDSamplerInput method)
(pyhrf.jde.models.BOLDSamplerInput method)
(pyhrf.jde.models.BOLDSampler_Multi_SessInput method)
(pyhrf.jde.models.Hab_WN_BiG_BOLDSamplerInput method)
(pyhrf.jde.models.WN_BiG_BOLDSamplerInput method)
(pyhrf.jde.models.WN_BiG_Drift_BOLDSamplerInput method)
makeQuietOutputs() (pyhrf.test.commandTest.TreatmentCommandTest method)
(pyhrf.test.test_glm.NipyGLMTest method)
manageMapping() (pyhrf.jde.samplerbase.GibbsSamplerVariable method)
manageMappingInit() (pyhrf.jde.samplerbase.GibbsSamplerVariable method)
map_dict() (in module pyhrf.tools.misc)
map_onto() (pyhrf.ndarray.xndarray method)
mapData() (pyhrf.boldsynth.spatialconfig.RegularLatticeMapping2 method)
Mapper1D (class in pyhrf.boldsynth.spatialconfig)
Mapper1DTest (class in pyhrf.test.boldsynthTest)
mapVoxData() (pyhrf.boldsynth.spatialconfig.RegularLatticeMapping method)
mark_wrong_labels() (in module pyhrf.stats.misc)
markWrongLabels() (pyhrf.jde.nrl.bigaussian.NRLSampler method)
mask_to_coords() (in module pyhrf.boldsynth.spatialconfig)
MaskToGraph() (in module pyhrf.boldsynth.pottsfield.swendsenwang)
maskToMapping() (in module pyhrf.boldsynth.spatialconfig)
match_init_args() (in module pyhrf.xmliobak.xmlbase)
MatlabXMLHandler (class in pyhrf.xmliobak.xmlmatlab)
max() (pyhrf.ndarray.xndarray method)
maximization_beta_m2_asl() (in module pyhrf.vbjde.vem_tools)
maximization_beta_m2_scipy_asl() (in module pyhrf.vbjde.vem_tools)
maximization_beta_m4_asl() (in module pyhrf.vbjde.vem_tools)
maximization_class_proba() (in module pyhrf.vbjde.vem_tools)
maximization_drift_coeffs() (in module pyhrf.vbjde.vem_tools)
maximization_LA_asl() (in module pyhrf.vbjde.vem_tools)
maximization_Mu_asl() (in module pyhrf.vbjde.vem_tools)
maximization_mu_sigma_asl() (in module pyhrf.vbjde.vem_tools)
maximization_mu_sigma_ms() (in module pyhrf.vbjde.vem_tools)
maximization_noise_var() (in module pyhrf.vbjde.vem_tools)
maximization_sigma_asl() (in module pyhrf.vbjde.vem_tools)
maximization_sigma_noise_asl() (in module pyhrf.vbjde.vem_tools)
maximization_sigmaH() (in module pyhrf.vbjde.vem_tools)
maximization_sigmaH_prior() (in module pyhrf.vbjde.vem_tools)
maximum() (in module pyhrf.vbjde.vem_tools)
MC_comp_pfmethods_ML() (pyhrf.validation.valid_beta_estim.ObsField2DTest method)
MC_comp_pfmethods_ML_3C() (pyhrf.validation.valid_beta_estim.ObsField2DTest method)
mean() (pyhrf.ndarray.xndarray method)
MeasureTest (class in pyhrf.test.test_parcellation)
Memory() (in module pyhrf.sandbox.parcellation)
merge() (in module pyhrf.ndarray)
merge_default_kwargs() (in module pyhrf.parallel)
merge_fmri_sessions() (in module pyhrf.core)
merge_fmri_subjects() (in module pyhrf.core)
merge_onsets() (in module pyhrf.paradigm)
mesh_contour() (in module pyhrf.surface)
mesh_contour_with_files() (in module pyhrf.surface)
Message (class in pyhrf.tools.message)
MessageColor (class in pyhrf.tools.message)
MessageNoColor (class in pyhrf.tools.message)
meta_obj (pyhrf.core.FmriData attribute)
MH_ARsampling_gauss_proposal() (pyhrf.jde.noise.NoiseARParamsSampler method)
MH_ARsampling_optim() (pyhrf.jde.noise.NoiseARParamsSampler method)
min() (pyhrf.ndarray.xndarray method)
MiscCommandTest (class in pyhrf.test.commandTest)
MiscTest (class in pyhrf.test.toolsTest)
mix_cmap() (in module pyhrf.plot)
mixtp_to_str() (in module pyhrf.sandbox.parcellation)
MixtureParamsSampler (class in pyhrf.jde.asl)
(class in pyhrf.jde.asl_physio)
(class in pyhrf.jde.asl_physio_1step)
(class in pyhrf.jde.asl_physio_1step_params)
(class in pyhrf.jde.asl_physio_det_fwdm)
(class in pyhrf.jde.asl_physio_hierarchical)
(class in pyhrf.jde.asl_physio_joint)
(class in pyhrf.jde.jde_multi_sujets)
(class in pyhrf.jde.jde_multi_sujets_alpha)
MixtureWeightsSampler (class in pyhrf.jde.nrl.bigaussian)
mode_help() (in module pyhrf.grid)
montecarlo() (in module pyhrf.tools.misc)
mountDefaultHandlers() (pyhrf.xmliobak.xmlbase.TypedXMLHandler method)
msqrt() (in module pyhrf.jde.hrf)
mult() (in module pyhrf.vbjde.vem_tools)
multiply() (pyhrf.ndarray.xndarray method)
MultiSessTest (class in pyhrf.test.jdetest)
(class in pyhrf.validation.valid_jde_bold_mono_subj_multi_sess)
MultiSubjTest (class in pyhrf.test.test_jde_multi_subj)
my_func() (in module pyhrf.tools.misc)
N
n_components_ (pyhrf.sandbox.parcellation.Ward attribute)
n_leaves_ (pyhrf.sandbox.parcellation.Ward attribute)
(pyhrf.sandbox.parcellation.WardAgglomeration attribute)
NB_PARAMS (pyhrf.jde.asl.MixtureParamsSampler attribute)
(pyhrf.jde.asl_physio.MixtureParamsSampler attribute)
(pyhrf.jde.asl_physio_1step.MixtureParamsSampler attribute)
(pyhrf.jde.asl_physio_1step_params.MixtureParamsSampler attribute)
(pyhrf.jde.asl_physio_det_fwdm.MixtureParamsSampler attribute)
(pyhrf.jde.asl_physio_hierarchical.MixtureParamsSampler attribute)
(pyhrf.jde.asl_physio_joint.MixtureParamsSampler attribute)
(pyhrf.jde.jde_multi_sess.BiGaussMixtureParams_Multi_Sess_NRLsBar_Sampler attribute)
(pyhrf.jde.jde_multi_sujets.MixtureParamsSampler attribute)
(pyhrf.jde.jde_multi_sujets_alpha.BiGaussMixtureParamsSampler attribute)
(pyhrf.jde.jde_multi_sujets_alpha.MixtureParamsSampler attribute)
(pyhrf.jde.nrl.bigaussian.BiGaussMixtureParamsSampler attribute)
(pyhrf.jde.nrl.bigaussian_drift.BiGaussMixtureParams_Multi_Sess_NRLsBar_Sampler attribute)
(pyhrf.jde.nrl.gammagaussian.GamGaussMixtureParamsSampler attribute)
(pyhrf.jde.nrl.trigaussian.TriGaussMixtureParamsSampler attribute)
nbNeighboursOrder1 (pyhrf.boldsynth.spatialconfig.RegularLatticeMapping attribute)
nbNeighboursOrder2 (pyhrf.boldsynth.spatialconfig.RegularLatticeMapping attribute)
nc2DGrid() (in module pyhrf.tools.misc)
NeighbourhoodSystem (class in pyhrf.boldsynth.spatialconfig)
next() (pyhrf.grid.TaskHierarchical method)
(pyhrf.grid.TaskList method)
NiftiTest (class in pyhrf.test.iotest)
NipyGLMTest (class in pyhrf.test.test_glm)
no_tty_check() (pyhrf.tools.misc.AnsiColorizer method)
NoiseARParamsSampler (class in pyhrf.jde.noise)
NoiseVariance_Drift_Multi_Sess_Sampler (class in pyhrf.jde.jde_multi_sess)
NoiseVariance_Drift_MultiSubj_Sampler (class in pyhrf.jde.jde_multi_sujets)
(class in pyhrf.jde.jde_multi_sujets_alpha)
NoiseVariance_Drift_Sampler (class in pyhrf.jde.noise)
NoiseVarianceARSampler (class in pyhrf.jde.noise)
NoiseVarianceSampler (class in pyhrf.jde.asl)
(class in pyhrf.jde.asl_physio)
(class in pyhrf.jde.asl_physio_1step)
(class in pyhrf.jde.asl_physio_1step_params)
(class in pyhrf.jde.asl_physio_det_fwdm)
(class in pyhrf.jde.asl_physio_hierarchical)
(class in pyhrf.jde.asl_physio_joint)
(class in pyhrf.jde.noise)
NoiseVarianceSamplerWithRelVar (class in pyhrf.jde.noise)
NoiseVariancewithHabSampler (class in pyhrf.jde.noise)
NoMessage (class in pyhrf.tools.message)
non_existent_canditate() (in module pyhrf.tools.misc)
non_existent_file() (in module pyhrf.tools.misc)
noneDOMWriter() (pyhrf.xmliobak.xmlbase.TypedXMLHandler static method)
noneTagDOMReader() (pyhrf.xmliobak.xmlbase.TypedXMLHandler static method)
norm1_constraint() (in module pyhrf.vbjde.vem_tools)
norm2_bc() (in module pyhrf.sandbox.parcellation)
normpdf() (in module pyhrf.vbjde.vem_tools)
not_available_status (pyhrf.grid.HostsManager attribute)
now() (in module pyhrf.tools.misc)
NRL_Drift_Sampler (class in pyhrf.jde.nrl.bigaussian_drift)
NRL_Drift_SamplerWithRelVar (class in pyhrf.jde.nrl.bigaussian_drift)
NRL_Multi_Sess_Sampler (class in pyhrf.jde.jde_multi_sess)
(class in pyhrf.jde.nrl.bigaussian)
NRLARSampler (class in pyhrf.jde.nrl.ar)
nrls_entropy() (in module pyhrf.vbjde.vem_tools)
nrls_expectation() (in module pyhrf.vbjde.vem_tools)
NRLs_Sampler (class in pyhrf.jde.jde_multi_sujets)
(class in pyhrf.jde.jde_multi_sujets_alpha)
NRLSampler (class in pyhrf.jde.nrl.bigaussian)
NRLSamplerWithRelVar (class in pyhrf.jde.nrl.bigaussian)
NRLsBar_Drift_Multi_Sess_Sampler (class in pyhrf.jde.jde_multi_sess)
(class in pyhrf.jde.nrl.bigaussian_drift)
NRLwithHabSampler (class in pyhrf.jde.nrl.habituation)
numpy_array_from_string() (in module pyhrf.xmlio)
NUMPY_ARRAY_TAG_NAME (pyhrf.xmliobak.xmlnumpy.NumpyXMLHandler attribute)
NUMPY_INT16_TAG_NAME (pyhrf.xmliobak.xmlnumpy.NumpyXMLHandler attribute)
NUMPY_INT32_TAG_NAME (pyhrf.xmliobak.xmlnumpy.NumpyXMLHandler attribute)
numpyObjectTagDOMReader() (pyhrf.xmliobak.xmlnumpy.NumpyXMLHandler static method)
numpyObjectTagDOMWriter() (pyhrf.xmliobak.xmlnumpy.NumpyXMLHandler static method)
NumpyXMLHandler (class in pyhrf.xmliobak.xmlnumpy)
O
Object (class in pyhrf.core)
ObsField2DTest (class in pyhrf.validation.valid_beta_estim)
odictDOMWriter() (pyhrf.xmliobak.xmlbase.TypedXMLHandler static method)
odictTagDOMReader() (pyhrf.xmliobak.xmlbase.TypedXMLHandler static method)
old_to_new_log_dict (pyhrf.Verbose attribute)
OneTaskManager (class in pyhrf.grid)
onsets (pyhrf.core.FmriData attribute)
order1Mask (pyhrf.boldsynth.spatialconfig.RegularLatticeMapping attribute)
order2Mask (pyhrf.boldsynth.spatialconfig.RegularLatticeMapping attribute)
OrderedDict (class in pyhrf.tools.backports)
output() (pyhrf.ui.treatment.FMRITreatment method)
outputResults() (pyhrf.ui.analyser_ui.FMRIAnalyser method)
outputResults_back_compat() (pyhrf.ui.analyser_ui.FMRIAnalyser method)
override_init() (pyhrf.xmliobak.xmlbase.XMLable method)
override_param_init() (pyhrf.xmliobak.xmlbase.XMLable2 method)
override_value() (pyhrf.xmliobak.xmlbase.XMLable method)
P
P_ACTIV_THRESH (pyhrf.jde.nrl.bigaussian_drift.BiGaussMixtureParams_Multi_Sess_NRLsBar_Sampler attribute)
P_BETA (pyhrf.jde.nrl.gammagaussian.InhomogeneousNRLSampler attribute)
P_COMPUTE_AH_ONLINE (pyhrf.jde.jde_multi_sujets.HRF_Group_Sampler attribute)
P_COVAR_HACK (pyhrf.jde.jde_multi_sujets.HRF_Group_Sampler attribute)
P_DERIV_ORDER (pyhrf.jde.jde_multi_sujets.HRF_Group_Sampler attribute)
P_DRIFT_LFD_PARAM (pyhrf.ui.jde.JDEMCMCAnalyser attribute)
P_DRIFT_LFD_TYPE (pyhrf.ui.jde.JDEMCMCAnalyser attribute)
P_DT (pyhrf.ui.jde.JDEMCMCAnalyser attribute)
P_DTMIN (pyhrf.ui.jde.JDEMCMCAnalyser attribute)
P_DURATION (pyhrf.jde.jde_multi_sujets.HRF_Group_Sampler attribute)
P_HAB_ALGO_PARAM (pyhrf.jde.nrl.habituation.NRLwithHabSampler attribute)
P_HABITS_INI (pyhrf.jde.nrl.habituation.NRLwithHabSampler attribute)
P_HYPER_PRIOR (pyhrf.jde.nrl.bigaussian_drift.BiGaussMixtureParams_Multi_Sess_NRLsBar_Sampler attribute)
P_LABELS_COLORS (pyhrf.jde.nrl.gammagaussian.InhomogeneousNRLSampler attribute)
P_LABELS_INI (pyhrf.jde.nrl.gammagaussian.InhomogeneousNRLSampler attribute)
P_MEAN_CA_PR_MEAN (pyhrf.jde.nrl.bigaussian_drift.BiGaussMixtureParams_Multi_Sess_NRLsBar_Sampler attribute)
P_MEAN_CA_PR_VAR (pyhrf.jde.nrl.bigaussian_drift.BiGaussMixtureParams_Multi_Sess_NRLsBar_Sampler attribute)
P_MEAN_CD_PR_MEAN (pyhrf.jde.nrl.trigaussian.TriGaussMixtureParamsSampler attribute)
P_MEAN_CD_PR_VAR (pyhrf.jde.nrl.trigaussian.TriGaussMixtureParamsSampler attribute)
P_NORMALISE (pyhrf.jde.jde_multi_sujets.HRF_Group_Sampler attribute)
P_OSFMAX (pyhrf.ui.jde.JDEMCMCAnalyser attribute)
P_OUTPUT_NRL (pyhrf.jde.nrl.bigaussian.NRL_Multi_Sess_Sampler attribute)
P_OUTPUT_PMHRF (pyhrf.jde.jde_multi_sujets.HRF_Group_Sampler attribute)
P_OUTPUT_PREFIX (pyhrf.ui.analyser_ui.FMRIAnalyser attribute)
P_OUTPUT_RATIO (pyhrf.jde.nrl.habituation.NRLwithHabSampler attribute)
P_PRIOR_TYPE (pyhrf.jde.jde_multi_sujets.HRF_Group_Sampler attribute)
P_RANDOM_SEED (pyhrf.ui.jde.JDEMCMCAnalyser attribute)
P_REGULARIZE (pyhrf.jde.jde_multi_sujets.HRF_Group_Sampler attribute)
P_ROI_AVERAGE (pyhrf.ui.analyser_ui.FMRIAnalyser attribute)
P_SAMPLE_FLAG (pyhrf.jde.jde_multi_sujets.HRF_Group_Sampler attribute)
(pyhrf.jde.jde_multi_sujets_alpha.Drift_MultiSubj_Sampler attribute)
(pyhrf.jde.noise.NoiseARParamsSampler attribute)
(pyhrf.jde.nrl.bigaussian.NRL_Multi_Sess_Sampler attribute)
(pyhrf.jde.nrl.bigaussian.Variance_GaussianNRL_Multi_Sess attribute)
(pyhrf.jde.nrl.bigaussian_drift.BiGaussMixtureParams_Multi_Sess_NRLsBar_Sampler attribute)
(pyhrf.jde.nrl.gammagaussian.GamGaussMixtureParamsSampler attribute)
(pyhrf.jde.nrl.gammagaussian.InhomogeneousNRLSampler attribute)
P_SAMPLE_HABITS (pyhrf.jde.nrl.habituation.NRLwithHabSampler attribute)
P_SAMPLE_LABELS (pyhrf.jde.nrl.gammagaussian.InhomogeneousNRLSampler attribute)
P_SAMPLER (pyhrf.ui.jde.JDEMCMCAnalyser attribute)
P_SCALE_CA_PR_ALPHA (pyhrf.jde.nrl.gammagaussian.GamGaussMixtureParamsSampler attribute)
P_SCALE_CA_PR_BETA (pyhrf.jde.nrl.gammagaussian.GamGaussMixtureParamsSampler attribute)
P_SHAPE_CA_PR_MEAN (pyhrf.jde.nrl.gammagaussian.GamGaussMixtureParamsSampler attribute)
P_TRUE_HABITS (pyhrf.jde.nrl.habituation.NRLwithHabSampler attribute)
P_TRUE_LABELS (pyhrf.jde.nrl.gammagaussian.InhomogeneousNRLSampler attribute)
P_TrueNrlFilename (pyhrf.jde.nrl.bigaussian.NRL_Multi_Sess_Sampler attribute)
P_USE_TRUE_NRLS (pyhrf.jde.nrl.bigaussian.NRL_Multi_Sess_Sampler attribute)
P_USE_TRUE_VALUE (pyhrf.jde.jde_multi_sujets.HRF_Group_Sampler attribute)
(pyhrf.jde.jde_multi_sujets_alpha.Drift_MultiSubj_Sampler attribute)
(pyhrf.jde.noise.NoiseARParamsSampler attribute)
(pyhrf.jde.nrl.bigaussian.Variance_GaussianNRL_Multi_Sess attribute)
(pyhrf.jde.nrl.bigaussian_drift.BiGaussMixtureParams_Multi_Sess_NRLsBar_Sampler attribute)
P_VAL_INI (pyhrf.jde.jde_multi_sujets.HRF_Group_Sampler attribute)
(pyhrf.jde.jde_multi_sujets_alpha.Drift_MultiSubj_Sampler attribute)
(pyhrf.jde.noise.NoiseARParamsSampler attribute)
(pyhrf.jde.nrl.bigaussian.NRL_Multi_Sess_Sampler attribute)
(pyhrf.jde.nrl.bigaussian.Variance_GaussianNRL_Multi_Sess attribute)
(pyhrf.jde.nrl.bigaussian_drift.BiGaussMixtureParams_Multi_Sess_NRLsBar_Sampler attribute)
(pyhrf.jde.nrl.gammagaussian.GamGaussMixtureParamsSampler attribute)
(pyhrf.jde.nrl.gammagaussian.InhomogeneousNRLSampler attribute)
P_VAR_CA_PR_ALPHA (pyhrf.jde.nrl.bigaussian_drift.BiGaussMixtureParams_Multi_Sess_NRLsBar_Sampler attribute)
P_VAR_CA_PR_BETA (pyhrf.jde.nrl.bigaussian_drift.BiGaussMixtureParams_Multi_Sess_NRLsBar_Sampler attribute)
P_VAR_CD_PR_ALPHA (pyhrf.jde.nrl.trigaussian.TriGaussMixtureParamsSampler attribute)
P_VAR_CD_PR_BETA (pyhrf.jde.nrl.trigaussian.TriGaussMixtureParamsSampler attribute)
P_VAR_CI_PR_ALPHA (pyhrf.jde.nrl.bigaussian_drift.BiGaussMixtureParams_Multi_Sess_NRLsBar_Sampler attribute)
(pyhrf.jde.nrl.gammagaussian.GamGaussMixtureParamsSampler attribute)
P_VAR_CI_PR_BETA (pyhrf.jde.nrl.bigaussian_drift.BiGaussMixtureParams_Multi_Sess_NRLsBar_Sampler attribute)
(pyhrf.jde.nrl.gammagaussian.GamGaussMixtureParamsSampler attribute)
P_VOXELWISE_OUTPUTS (pyhrf.jde.jde_multi_sujets.HRF_Group_Sampler attribute)
P_ZERO_CONSTR (pyhrf.jde.jde_multi_sujets.HRF_Group_Sampler attribute)
packHandlers() (pyhrf.xmliobak.xmlbase.TypedXMLHandler method)
(pyhrf.xmliobak.xmlmatlab.MatlabXMLHandler method)
(pyhrf.xmliobak.xmlnumpy.NumpyXMLHandler method)
packSamplerInput() (pyhrf.ui.jde.JDEMCMCAnalyser method)
Paradigm (class in pyhrf.paradigm)
ParadigmTest (class in pyhrf.test.test_paradigm)
ParallelTest (class in pyhrf.test.test_parallel)
parametersComments (pyhrf.core.FmriData attribute)
(pyhrf.core.FMRISessionVolumicData attribute)
(pyhrf.jde.beta.BetaSampler attribute)
(pyhrf.jde.hrf.HRFSampler attribute)
(pyhrf.jde.jde_multi_sess.BOLDGibbs_Multi_SessSampler attribute)
(pyhrf.jde.jde_multi_sess.BiGaussMixtureParams_Multi_Sess_NRLsBar_Sampler attribute)
(pyhrf.jde.jde_multi_sess.HRF_MultiSess_Sampler attribute)
(pyhrf.jde.jde_multi_sujets.BOLDGibbs_Multi_SubjSampler attribute)
(pyhrf.jde.jde_multi_sujets.HRF_Group_Sampler attribute)
(pyhrf.jde.jde_multi_sujets.HRF_Sampler attribute)
(pyhrf.jde.jde_multi_sujets_alpha.BiGaussMixtureParamsSampler attribute)
(pyhrf.jde.jde_multi_sujets_alpha.HRF_Group_Sampler attribute)
(pyhrf.jde.jde_multi_sujets_alpha.HRF_Sampler attribute)
(pyhrf.jde.models.BOLDGibbsSampler attribute)
(pyhrf.jde.models.BOLDGibbsSampler_AR attribute)
(pyhrf.jde.nrl.bigaussian.BiGaussMixtureParamsSampler attribute)
(pyhrf.jde.nrl.bigaussian.NRLSampler attribute)
(pyhrf.jde.nrl.bigaussian.NRL_Multi_Sess_Sampler attribute)
(pyhrf.jde.nrl.bigaussian_drift.BiGaussMixtureParams_Multi_Sess_NRLsBar_Sampler attribute)
(pyhrf.jde.nrl.habituation.NRLwithHabSampler attribute)
(pyhrf.rfir.RFIREstim attribute)
(pyhrf.ui.analyser_ui.FMRIAnalyser attribute)
(pyhrf.ui.glm_ui.GLMAnalyser attribute)
(pyhrf.ui.jde.JDEMCMCAnalyser attribute)
(pyhrf.ui.treatment.FMRITreatment attribute)
(pyhrf.ui.vb_jde_analyser.JDEVEMAnalyser attribute)
(pyhrf.ui.vb_jde_analyser_asl_fast.JDEVEMAnalyser attribute)
(pyhrf.ui.vb_jde_analyser_bold_fast.JDEVEMAnalyser attribute)
(pyhrf.xmliobak.xmlbase.XMLParamDrivenClass attribute)
parametersMeta (pyhrf.xmliobak.xmlbase.XMLParamDrivenClass attribute)
parametersToShow (pyhrf.core.FmriData attribute)
(pyhrf.jde.asl.ASLSampler attribute)
(pyhrf.jde.asl_physio.ASLPhysioSampler attribute)
(pyhrf.jde.asl_physio_1step.ASLPhysioSampler attribute)
(pyhrf.jde.asl_physio_1step_params.ASLPhysioSampler attribute)
(pyhrf.jde.asl_physio_det_fwdm.ASLPhysioSampler attribute)
(pyhrf.jde.asl_physio_hierarchical.ASLPhysioSampler attribute)
(pyhrf.jde.asl_physio_joint.ASLPhysioSampler attribute)
(pyhrf.jde.beta.BetaSampler attribute)
(pyhrf.jde.hrf.HRFSampler attribute)
(pyhrf.jde.hrf.RHSampler attribute)
(pyhrf.jde.jde_multi_sess.BOLDGibbs_Multi_SessSampler attribute)
(pyhrf.jde.jde_multi_sess.BiGaussMixtureParams_Multi_Sess_NRLsBar_Sampler attribute)
(pyhrf.jde.jde_multi_sess.HRF_MultiSess_Sampler attribute)
(pyhrf.jde.jde_multi_sujets.BOLDGibbs_Multi_SubjSampler attribute)
(pyhrf.jde.jde_multi_sujets.HRF_Group_Sampler attribute)
(pyhrf.jde.jde_multi_sujets_alpha.Alpha_hgroup_Sampler attribute)
(pyhrf.jde.jde_multi_sujets_alpha.HRF_Group_Sampler attribute)
(pyhrf.jde.jde_multi_sujets_alpha.HRF_Sampler attribute)
(pyhrf.jde.jde_multi_sujets_alpha.NoiseVariance_Drift_MultiSubj_Sampler attribute)
(pyhrf.jde.models.BOLDGibbsSampler attribute)
(pyhrf.jde.models.BOLDGibbsSampler_AR attribute)
(pyhrf.jde.models.Drift_BOLDGibbsSampler attribute)
(pyhrf.jde.models.W_BOLDGibbsSampler attribute)
(pyhrf.jde.models.W_Drift_BOLDGibbsSampler attribute)
(pyhrf.jde.nrl.bigaussian.BiGaussMixtureParamsSampler attribute)
(pyhrf.jde.nrl.bigaussian.NRLSampler attribute)
(pyhrf.jde.nrl.bigaussian.NRL_Multi_Sess_Sampler attribute)
(pyhrf.jde.nrl.bigaussian.Variance_GaussianNRL_Multi_Sess attribute)
(pyhrf.jde.nrl.bigaussian_drift.BiGaussMixtureParams_Multi_Sess_NRLsBar_Sampler attribute)
(pyhrf.rfir.RFIREstim attribute)
(pyhrf.ui.analyser_ui.FMRIAnalyser attribute)
(pyhrf.ui.glm_ui.GLMAnalyser attribute)
(pyhrf.ui.jde.JDEMCMCAnalyser attribute)
(pyhrf.ui.rfir_ui.RFIRAnalyser attribute)
(pyhrf.ui.treatment.FMRITreatment attribute)
(pyhrf.ui.vb_jde_analyser.JDEVEMAnalyser attribute)
(pyhrf.ui.vb_jde_analyser_asl_fast.JDEVEMAnalyser attribute)
(pyhrf.ui.vb_jde_analyser_bold_fast.JDEVEMAnalyser attribute)
parametersToXml() (pyhrf.xmliobak.xmlbase.XMLParamDrivenClass method)
PARAMS_NAMES (pyhrf.jde.asl.MixtureParamsSampler attribute)
(pyhrf.jde.asl_physio.MixtureParamsSampler attribute)
(pyhrf.jde.asl_physio_1step.MixtureParamsSampler attribute)
(pyhrf.jde.asl_physio_1step_params.MixtureParamsSampler attribute)
(pyhrf.jde.asl_physio_det_fwdm.MixtureParamsSampler attribute)
(pyhrf.jde.asl_physio_hierarchical.MixtureParamsSampler attribute)
(pyhrf.jde.asl_physio_joint.MixtureParamsSampler attribute)
(pyhrf.jde.jde_multi_sess.BiGaussMixtureParams_Multi_Sess_NRLsBar_Sampler attribute)
(pyhrf.jde.jde_multi_sujets.MixtureParamsSampler attribute)
(pyhrf.jde.jde_multi_sujets_alpha.BiGaussMixtureParamsSampler attribute)
(pyhrf.jde.jde_multi_sujets_alpha.MixtureParamsSampler attribute)
(pyhrf.jde.nrl.bigaussian.BiGaussMixtureParamsSampler attribute)
(pyhrf.jde.nrl.bigaussian_drift.BiGaussMixtureParams_Multi_Sess_NRLsBar_Sampler attribute)
(pyhrf.jde.nrl.gammagaussian.GamGaussMixtureParamsSampler attribute)
(pyhrf.jde.nrl.trigaussian.TriGaussMixtureParamsSampler attribute)
parcellate_balanced_vol() (in module pyhrf.parcellation)
parcellate_voronoi_vol() (in module pyhrf.parcellation)
parcellation_dist() (in module pyhrf.parcellation)
parcellation_for_jde() (in module pyhrf.parcellation)
parcellation_hemodynamics() (in module pyhrf.sandbox.parcellation)
parcellation_report() (in module pyhrf.parcellation)
parcellation_ward_spatial() (in module pyhrf.parcellation)
ParcellationMethodTest (class in pyhrf.test.test_parcellation)
ParcellationTest (class in pyhrf.validation.valid_sandbox_parcellation)
parcels_to_graphs() (in module pyhrf.graph)
parse_data_options() (in module pyhrf.ui.treatment)
parse_options() (in module pyhrf.grid)
parseXMLString() (pyhrf.xmliobak.xmlbase.TypedXMLHandler method)
PartitionFunctionTest (class in pyhrf.test.jdetest)
(class in pyhrf.validation.valid_rndm_field)
peelVolume3D() (in module pyhrf.tools.misc)
PeelVolumeTest (class in pyhrf.test.toolsTest)
PerfBaselineSampler (class in pyhrf.jde.asl)
(class in pyhrf.jde.asl_physio)
(class in pyhrf.jde.asl_physio_1step)
(class in pyhrf.jde.asl_physio_1step_params)
(class in pyhrf.jde.asl_physio_det_fwdm)
(class in pyhrf.jde.asl_physio_hierarchical)
(class in pyhrf.jde.asl_physio_joint)
PerfBaselineVarianceSampler (class in pyhrf.jde.asl)
(class in pyhrf.jde.asl_physio)
(class in pyhrf.jde.asl_physio_1step)
(class in pyhrf.jde.asl_physio_1step_params)
(class in pyhrf.jde.asl_physio_det_fwdm)
(class in pyhrf.jde.asl_physio_hierarchical)
(class in pyhrf.jde.asl_physio_joint)
PerfMixtureSampler (class in pyhrf.jde.asl)
(class in pyhrf.jde.asl_physio)
(class in pyhrf.jde.asl_physio_1step)
(class in pyhrf.jde.asl_physio_1step_params)
(class in pyhrf.jde.asl_physio_det_fwdm)
(class in pyhrf.jde.asl_physio_hierarchical)
(class in pyhrf.jde.asl_physio_joint)
PerfResponseLevelSampler (class in pyhrf.jde.asl)
(class in pyhrf.jde.asl_physio)
(class in pyhrf.jde.asl_physio_1step)
(class in pyhrf.jde.asl_physio_1step_params)
(class in pyhrf.jde.asl_physio_det_fwdm)
(class in pyhrf.jde.asl_physio_hierarchical)
(class in pyhrf.jde.asl_physio_joint)
PerfResponseSampler (class in pyhrf.jde.asl)
PerfResponseVarianceSampler (class in pyhrf.jde.asl)
permutation() (in module pyhrf.jde.jde_multi_sess)
(in module pyhrf.jde.models)
(in module pyhrf.jde.nrl.bigaussian_drift)
(in module pyhrf.parcellation)
phy_integrate_euler() (in module pyhrf.sandbox.physio)
(in module pyhrf.sandbox.physio_params)
physio_build_jde_mcmc_sampler() (in module pyhrf.jde.asl_2steps)
PhysioBOLDResponseSampler (class in pyhrf.jde.asl_physio)
(class in pyhrf.jde.asl_physio_1step)
(class in pyhrf.jde.asl_physio_1step_params)
(class in pyhrf.jde.asl_physio_det_fwdm)
(class in pyhrf.jde.asl_physio_hierarchical)
(class in pyhrf.jde.asl_physio_joint)
PhysioBOLDResponseVarianceSampler (class in pyhrf.jde.asl_physio)
(class in pyhrf.jde.asl_physio_1step)
(class in pyhrf.jde.asl_physio_1step_params)
(class in pyhrf.jde.asl_physio_det_fwdm)
(class in pyhrf.jde.asl_physio_hierarchical)
PhysioJointResponseVarianceSampler (class in pyhrf.jde.asl_physio_joint)
PhysioPerfResponseSampler (class in pyhrf.jde.asl_physio)
(class in pyhrf.jde.asl_physio_1step)
(class in pyhrf.jde.asl_physio_1step_params)
(class in pyhrf.jde.asl_physio_det_fwdm)
(class in pyhrf.jde.asl_physio_hierarchical)
(class in pyhrf.jde.asl_physio_joint)
PhysioPerfResponseVarianceSampler (class in pyhrf.jde.asl_physio)
(class in pyhrf.jde.asl_physio_1step)
(class in pyhrf.jde.asl_physio_1step_params)
(class in pyhrf.jde.asl_physio_det_fwdm)
(class in pyhrf.jde.asl_physio_hierarchical)
PhysioTrueBOLDResponseSampler (class in pyhrf.jde.asl_physio_hierarchical)
PhysioTrueBOLDResponseVarianceSampler (class in pyhrf.jde.asl_physio_hierarchical)
pickLabels() (in module pyhrf.boldsynth.pottsfield.swendsenwang)
pickle_result() (pyhrf.ui.treatment.FMRITreatment method)
PickleableStaticMethod (class in pyhrf.tools.misc)
Pipeline (class in pyhrf.tools.misc)
PipelineTest (class in pyhrf.test.toolsTest)
plot_anat_parcel_func_fusion() (in module pyhrf.plot)
plot_calc_hrf() (in module pyhrf.sandbox.physio)
plot_convergence() (in module pyhrf.vbjde.vem_tools)
plot_cub_as_curve() (in module pyhrf.plot)
plot_cub_as_image() (in module pyhrf.plot)
plot_func_slice() (in module pyhrf.plot)
plot_gaussian_mixture() (in module pyhrf.plot)
plot_gaussian_pdf() (in module pyhrf.plot)
plot_palette() (in module pyhrf.plot)
plot_response_functions_it() (in module pyhrf.vbjde.vem_tools)
plot_spm_mip() (in module pyhrf.plot)
PlotCommandTest (class in pyhrf.test.test_plot)
PlotFunctionsTest (class in pyhrf.test.test_plot)
poly_drifts_basis() (in module pyhrf.vbjde.vem_tools)
polyError
polyFit() (in module pyhrf.tools.misc)
(in module pyhrf.vbjde.vem_tools)
PolyMat() (in module pyhrf.vbjde.vem_tools)
pop() (pyhrf.tools.backports.OrderedDict method)
popitem() (pyhrf.tools.backports.OrderedDict method)
potts_generator() (in module pyhrf.boldsynth.field)
PottsField (class in pyhrf.boldsynth.spatialconfig)
PottsTest (class in pyhrf.validation.valid_rndm_field)
ppm_contrasts() (in module pyhrf.vbjde.vem_tools)
PPMcalculus() (pyhrf.jde.nrl.bigaussian.NRLSampler method)
PPMcalculus_jde() (in module pyhrf.tools.misc)
ppms_computation() (in module pyhrf.vbjde.vem_tools)
PPMTest (class in pyhrf.test.statsTest)
PR_MEAN (pyhrf.jde.jde_multi_sujets_alpha.HRFVarianceSubjectSampler attribute)
(pyhrf.jde.jde_multi_sujets_alpha.RHGroupSampler attribute)
PR_VAR (pyhrf.jde.jde_multi_sujets_alpha.HRFVarianceSubjectSampler attribute)
(pyhrf.jde.jde_multi_sujets_alpha.RHGroupSampler attribute)
prepare_treatment_jobs() (in module pyhrf.parallel)
print_status() (pyhrf.grid.TasksManager method)
printState() (pyhrf.jde.nrl.bigaussian.NRLSampler method)
probe() (pyhrf.grid.HostsManager method)
ProbeHost (class in pyhrf.grid)
project_fmri() (in module pyhrf.surface)
project_fmri_from_kernels() (in module pyhrf.surface)
protect_xml_attr() (in module pyhrf.xmlio)
ptp() (pyhrf.ndarray.xndarray method)
pyhrf (module)
pyhrf.boldsynth (module)
pyhrf.boldsynth.field (module)
pyhrf.boldsynth.hrf (module)
pyhrf.boldsynth.pottsfield (module)
pyhrf.boldsynth.pottsfield.swendsenwang (module)
pyhrf.boldsynth.scenarios (module)
pyhrf.boldsynth.spatialconfig (module)
pyhrf.configuration (module)
pyhrf.core (module)
pyhrf.glm (module)
pyhrf.graph (module)
pyhrf.grid (module)
pyhrf.jde (module)
pyhrf.jde.asl (module)
pyhrf.jde.asl_2steps (module)
pyhrf.jde.asl_physio (module)
pyhrf.jde.asl_physio_1step (module)
pyhrf.jde.asl_physio_1step_params (module)
pyhrf.jde.asl_physio_det_fwdm (module)
pyhrf.jde.asl_physio_hierarchical (module)
pyhrf.jde.asl_physio_joint (module)
pyhrf.jde.beta (module)
pyhrf.jde.drift (module)
pyhrf.jde.hrf (module)
pyhrf.jde.jde_multi_sess (module)
pyhrf.jde.jde_multi_sujets (module)
pyhrf.jde.jde_multi_sujets_alpha (module)
pyhrf.jde.models (module)
pyhrf.jde.noise (module)
pyhrf.jde.nrl (module)
pyhrf.jde.nrl.ar (module)
pyhrf.jde.nrl.base (module)
pyhrf.jde.nrl.bigaussian (module)
pyhrf.jde.nrl.bigaussian_drift (module)
pyhrf.jde.nrl.gammagaussian (module)
pyhrf.jde.nrl.habituation (module)
pyhrf.jde.nrl.trigaussian (module)
pyhrf.jde.samplerbase (module)
pyhrf.jde.wsampler (module)
pyhrf.ndarray (module)
pyhrf.paradigm (module)
pyhrf.parallel (module)
pyhrf.parcellation (module)
pyhrf.plot (module)
pyhrf.rfir (module)
pyhrf.sandbox (module)
pyhrf.sandbox.data_parser (module)
pyhrf.sandbox.func_BMA_consensus_clustering (module)
pyhrf.sandbox.make_parcellation (module)
pyhrf.sandbox.parcellation (module)
pyhrf.sandbox.physio (module)
pyhrf.sandbox.physio_params (module)
pyhrf.sandbox.stats (module)
pyhrf.stats (module)
pyhrf.stats.misc (module)
pyhrf.stats.random (module)
pyhrf.surface (module)
pyhrf.test (module)
pyhrf.test.analysertest (module)
pyhrf.test.boldsynthTest (module)
pyhrf.test.commandTest (module)
pyhrf.test.core_test (module)
pyhrf.test.graphtest (module)
pyhrf.test.iotest (module)
pyhrf.test.jdetest (module)
pyhrf.test.rfir_test (module)
pyhrf.test.seppotest (module)
pyhrf.test.statsTest (module)
pyhrf.test.test (module)
pyhrf.test.test_glm (module)
pyhrf.test.test_jde_multi_subj (module)
pyhrf.test.test_jde_vem_asl (module)
pyhrf.test.test_jde_vem_bold (module)
pyhrf.test.test_jde_vem_tools (module)
pyhrf.test.test_jde_vem_tools_asl (module)
pyhrf.test.test_jde_vem_tools_UtilsC (module)
pyhrf.test.test_ndarray (module)
pyhrf.test.test_paradigm (module)
pyhrf.test.test_parallel (module)
pyhrf.test.test_parcellation (module)
pyhrf.test.test_plot (module)
pyhrf.test.test_rfir (module)
pyhrf.test.test_sampler (module)
pyhrf.test.test_sandbox_physio (module)
pyhrf.test.test_treatment (module)
pyhrf.test.test_xml (module)
pyhrf.test.toolsTest (module)
pyhrf.tools (module)
pyhrf.tools.aexpression (module)
pyhrf.tools.backports (module)
pyhrf.tools.cpus (module)
pyhrf.tools.message (module)
pyhrf.tools.misc (module)
pyhrf.ui (module)
pyhrf.ui.analyser_ui (module)
pyhrf.ui.glm_analyser (module)
pyhrf.ui.glm_ui (module)
pyhrf.ui.jde (module)
pyhrf.ui.rfir_ui (module)
pyhrf.ui.treatment (module)
pyhrf.ui.vb_jde_analyser (module)
pyhrf.ui.vb_jde_analyser_asl_fast (module)
pyhrf.ui.vb_jde_analyser_bold_fast (module)
pyhrf.usemode (module)
pyhrf.validation (module)
pyhrf.validation.config (module)
pyhrf.validation.valid_beta_estim (module)
pyhrf.validation.valid_jde_asl (module)
pyhrf.validation.valid_jde_asl_physio (module)
pyhrf.validation.valid_jde_asl_physio_alpha (module)
pyhrf.validation.valid_jde_bold_mono_subj_multi_sess (module)
pyhrf.validation.valid_jde_bold_mono_subj_sess (module)
pyhrf.validation.valid_jde_vem_asl (module)
pyhrf.validation.valid_rfir (module)
pyhrf.validation.valid_rndm_field (module)
pyhrf.validation.valid_sandbox_parcellation (module)
pyhrf.vbjde (module)
pyhrf.vbjde.vem_asl_models_fast (module)
pyhrf.vbjde.vem_asl_models_fast_ms (module)
pyhrf.vbjde.vem_bold (module)
pyhrf.vbjde.vem_bold_constrained (module)
pyhrf.vbjde.vem_bold_models_fast (module)
pyhrf.vbjde.vem_bold_models_fast_ms (module)
pyhrf.vbjde.vem_tools (module)
pyhrf.version (module)
pyhrf.xmlio (module)
pyhrf.xmliobak (module)
pyhrf.xmliobak.xmlbase (module)
pyhrf.xmliobak.xmlmatlab (module)
pyhrf.xmliobak.xmlnumpy (module)
Q
Q_Entropy() (in module pyhrf.vbjde.vem_tools)
Q_expectation_Ptilde() (in module pyhrf.vbjde.vem_tools)
quit() (in module pyhrf.grid)
R
rand() (in module pyhrf.jde.jde_multi_sess)
(in module pyhrf.jde.models)
(in module pyhrf.jde.nrl.bigaussian_drift)
(in module pyhrf.parcellation)
(in module pyhrf.stats.random)
(in module pyhrf.test)
(in module pyhrf.test.boldsynthTest)
(in module pyhrf.test.test)
randint() (in module pyhrf.parcellation)
randn() (in module pyhrf.boldsynth.scenarios)
(in module pyhrf.jde.asl)
(in module pyhrf.jde.jde_multi_sess)
(in module pyhrf.jde.jde_multi_sujets)
(in module pyhrf.jde.jde_multi_sujets_alpha)
(in module pyhrf.jde.models)
(in module pyhrf.jde.nrl.bigaussian_drift)
(in module pyhrf.stats.random)
(in module pyhrf.test)
(in module pyhrf.test.boldsynthTest)
(in module pyhrf.test.test)
(in module pyhrf.validation)
(in module pyhrf.validation.valid_beta_estim)
random_field_generator (class in pyhrf.boldsynth.field)
random_pick() (in module pyhrf.parcellation)
RandomGenerator (class in pyhrf.stats.random)
randomize() (pyhrf.boldsynth.spatialconfig.StateField method)
rasterize_paradigm() (in module pyhrf.boldsynth.scenarios)
read_hierarchic_tasks() (in module pyhrf.grid)
read_hosts() (in module pyhrf.grid)
read_tasks() (in module pyhrf.grid)
read_timeslot() (in module pyhrf.grid)
read_xml() (in module pyhrf.xmlio)
(in module pyhrf.xmliobak.xmlbase)
readDOMData() (pyhrf.xmliobak.xmlbase.TypedXMLHandler method)
ReadPointOfInterestData() (pyhrf.rfir.RFIREstim method)
rebin() (in module pyhrf.tools.misc)
record() (pyhrf.jde.samplerbase.Trajectory method)
record_trajectories() (pyhrf.jde.samplerbase.GibbsSamplerVariable method)
registerNbIterations() (pyhrf.jde.samplerbase.GibbsSamplerVariable method)
RegularLatticeMapping (class in pyhrf.boldsynth.spatialconfig)
RegularLatticeMapping2 (class in pyhrf.boldsynth.spatialconfig)
regVarsInPipeline() (pyhrf.jde.samplerbase.GibbsSampler method)
remote_dir_is_writable() (in module pyhrf.grid)
remote_map() (in module pyhrf.parallel)
remote_map_marshal() (in module pyhrf.parallel)
RemoteException
removeShortCircuits() (pyhrf.tools.misc.Pipeline method)
render_ward_tree() (in module pyhrf.sandbox.parcellation)
reorient() (pyhrf.ndarray.xndarray method)
repeat() (pyhrf.ndarray.xndarray method)
RepeatedTasksManager (class in pyhrf.grid)
replace_data_dir() (pyhrf.ui.treatment.FMRITreatment method)
replace_ext() (in module pyhrf.tools.misc)
report_arrays_in_obj() (in module pyhrf.tools.misc)
reportChange() (pyhrf.tools.misc.Pipeline method)
reportCurrentVal() (pyhrf.jde.hrf.HRF_two_parts_Sampler method)
(pyhrf.jde.hrf.HRFSampler method)
(pyhrf.jde.jde_multi_sess.HRF_MultiSess_Sampler method)
(pyhrf.jde.jde_multi_sujets.HRF_Group_Sampler method)
(pyhrf.jde.jde_multi_sujets.HRF_Sampler method)
(pyhrf.jde.jde_multi_sujets_alpha.HRF_Group_Sampler method)
(pyhrf.jde.jde_multi_sujets_alpha.HRF_Sampler method)
reportDetection() (pyhrf.jde.nrl.bigaussian.NRLSampler method)
reprAllDeps() (pyhrf.tools.misc.Pipeline method)
reprDep() (pyhrf.tools.misc.Pipeline method)
represent_features() (in module pyhrf.sandbox.parcellation)
resampleSignal() (in module pyhrf.tools.misc)
ResampleTest (class in pyhrf.test.toolsTest)
resampleToGrid() (in module pyhrf.tools.misc)
rescale_bold_over_perf() (in module pyhrf.sandbox.physio)
rescale_hrf_group() (in module pyhrf.jde.jde_multi_sujets)
rescale_hrf_subj() (in module pyhrf.jde.jde_multi_sujets)
rescale_hrf_subj_var() (in module pyhrf.jde.jde_multi_sujets)
rescale_values() (in module pyhrf.tools.misc)
(pyhrf.ndarray.xndarray method)
reset() (pyhrf.sandbox.stats.GibbsSampler method)
(pyhrf.sandbox.stats.GSVariable method)
resolve() (pyhrf.parcellation.World method)
(pyhrf.tools.misc.Pipeline method)
ResponseLevelSampler (class in pyhrf.jde.asl)
(class in pyhrf.jde.asl_physio)
(class in pyhrf.jde.asl_physio_1step)
(class in pyhrf.jde.asl_physio_1step_params)
(class in pyhrf.jde.asl_physio_det_fwdm)
(class in pyhrf.jde.asl_physio_hierarchical)
(class in pyhrf.jde.asl_physio_joint)
ResponseSampler (class in pyhrf.jde.asl)
(class in pyhrf.jde.asl_physio)
(class in pyhrf.jde.asl_physio_1step)
(class in pyhrf.jde.asl_physio_1step_params)
(class in pyhrf.jde.asl_physio_det_fwdm)
(class in pyhrf.jde.asl_physio_hierarchical)
(class in pyhrf.jde.asl_physio_joint)
ResponseVarianceSampler (class in pyhrf.jde.asl)
(class in pyhrf.jde.asl_physio)
(class in pyhrf.jde.asl_physio_1step)
(class in pyhrf.jde.asl_physio_1step_params)
(class in pyhrf.jde.asl_physio_det_fwdm)
restarize_events() (in module pyhrf.paradigm)
RF_Entropy() (in module pyhrf.vbjde.vem_tools)
RF_expectation_Ptilde() (in module pyhrf.vbjde.vem_tools)
rfir() (in module pyhrf.rfir)
RFIRAnalyser (class in pyhrf.ui.rfir_ui)
RFIREstim (class in pyhrf.rfir)
RFIRTest (class in pyhrf.test.test_rfir)
(class in pyhrf.validation.valid_rfir)
RHGroupSampler (class in pyhrf.jde.jde_multi_sujets)
(class in pyhrf.jde.jde_multi_sujets_alpha)
RHSampler (class in pyhrf.jde.hrf)
RL_Entropy() (in module pyhrf.vbjde.vem_tools)
RL_expectation_Ptilde() (in module pyhrf.vbjde.vem_tools)
roc_curve() (in module pyhrf.vbjde.vem_tools)
roi_split() (pyhrf.core.FmriData method)
(pyhrf.core.FmriGroupData method)
roiMapped() (pyhrf.jde.samplerbase.GibbsSamplerVariable method)
roiMask (pyhrf.core.FmriData attribute)
,
[1]
roll() (pyhrf.ndarray.xndarray method)
root3() (in module pyhrf.tools.misc)
rootTagDOMReader() (pyhrf.xmliobak.xmlbase.TypedXMLHandler method)
rotate() (in module pyhrf.plot)
round_nb_parcels() (in module pyhrf.parcellation)
rpnorm() (in module pyhrf.stats.random)
RPNormTest (class in pyhrf.test.statsTest)
run() (pyhrf.grid.ProbeHost method)
(pyhrf.grid.TasksStarter method)
(pyhrf.rfir.RFIREstim method)
(pyhrf.sandbox.stats.GibbsSampler method)
(pyhrf.ui.treatment.FMRITreatment method)
run_analysis() (in module pyhrf.ui.vb_jde_analyser)
(in module pyhrf.ui.vb_jde_analyser_asl_fast)
(in module pyhrf.ui.vb_jde_analyser_bold_fast)
run_calc_linear_rfs() (in module pyhrf.sandbox.physio)
run_grid() (in module pyhrf.grid)
run_pyhrf_cmd_treatment() (in module pyhrf.ui.treatment)
run_soma_workflow() (in module pyhrf.parallel)
runEstimationBetaEstim() (in module pyhrf.ui.jde)
runEstimationSupervised() (in module pyhrf.ui.jde)
runSampling() (pyhrf.jde.samplerbase.GibbsSampler method)
RxCopyTest (class in pyhrf.test.iotest)
S
safe_init() (in module pyhrf.sandbox.data_parser)
safe_list() (in module pyhrf.sandbox.data_parser)
same() (in module pyhrf.sandbox.data_parser)
sample() (pyhrf.sandbox.stats.GSVariable method)
sampleDrift() (in module pyhrf.jde.drift)
sampleHRF_single_hrf() (in module pyhrf.jde.hrf)
(in module pyhrf.jde.jde_multi_sess)
(in module pyhrf.jde.jde_multi_sujets)
(in module pyhrf.jde.jde_multi_sujets_alpha)
sampleHRF_single_hrf_hack() (in module pyhrf.jde.hrf)
(in module pyhrf.jde.jde_multi_sess)
(in module pyhrf.jde.jde_multi_sujets)
(in module pyhrf.jde.jde_multi_sujets_alpha)
sampleHRF_voxelwise_iid() (in module pyhrf.jde.hrf)
(in module pyhrf.jde.jde_multi_sess)
(in module pyhrf.jde.jde_multi_sujets)
(in module pyhrf.jde.jde_multi_sujets_alpha)
sampleLabels() (pyhrf.jde.nrl.bigaussian.NRLSampler method)
(pyhrf.jde.nrl.gammagaussian.InhomogeneousNRLSampler method)
(pyhrf.jde.nrl.trigaussian.GGGNRLSampler method)
sampleLabelsWithRelVar() (pyhrf.jde.nrl.bigaussian.NRLSamplerWithRelVar method)
sampleNextAlt() (pyhrf.jde.drift.DriftARSampler method)
(pyhrf.jde.hrf.HRFSampler method)
(pyhrf.jde.hrf.HRF_two_parts_Sampler method)
(pyhrf.jde.jde_multi_sess.Drift_MultiSess_Sampler method)
(pyhrf.jde.jde_multi_sess.HRF_MultiSess_Sampler method)
(pyhrf.jde.jde_multi_sess.NRL_Multi_Sess_Sampler method)
(pyhrf.jde.jde_multi_sess.NRLsBar_Drift_Multi_Sess_Sampler method)
(pyhrf.jde.jde_multi_sujets.Drift_MultiSubj_Sampler method)
(pyhrf.jde.jde_multi_sujets.HRF_Group_Sampler method)
(pyhrf.jde.jde_multi_sujets.HRF_Sampler method)
(pyhrf.jde.jde_multi_sujets_alpha.Drift_MultiSubj_Sampler method)
(pyhrf.jde.jde_multi_sujets_alpha.HRF_Group_Sampler method)
(pyhrf.jde.jde_multi_sujets_alpha.HRF_Sampler method)
(pyhrf.jde.nrl.ar.NRLARSampler method)
(pyhrf.jde.nrl.bigaussian.NRLSampler method)
(pyhrf.jde.nrl.bigaussian.NRL_Multi_Sess_Sampler method)
(pyhrf.jde.nrl.bigaussian_drift.NRLsBar_Drift_Multi_Sess_Sampler method)
(pyhrf.jde.nrl.gammagaussian.InhomogeneousNRLSampler method)
(pyhrf.jde.nrl.habituation.NRLwithHabSampler method)
(pyhrf.jde.samplerbase.GibbsSamplerVariable method)
sampleNextInternal() (pyhrf.jde.asl.DriftCoeffSampler method)
(pyhrf.jde.asl.DriftVarianceSampler method)
(pyhrf.jde.asl.LabelSampler method)
(pyhrf.jde.asl.MixtureParamsSampler method)
(pyhrf.jde.asl.NoiseVarianceSampler method)
(pyhrf.jde.asl.PerfBaselineSampler method)
(pyhrf.jde.asl.PerfBaselineVarianceSampler method)
(pyhrf.jde.asl.ResponseLevelSampler method)
(pyhrf.jde.asl.ResponseSampler method)
(pyhrf.jde.asl.ResponseVarianceSampler method)
(pyhrf.jde.asl_physio.DriftCoeffSampler method)
(pyhrf.jde.asl_physio.DriftVarianceSampler method)
(pyhrf.jde.asl_physio.LabelSampler method)
(pyhrf.jde.asl_physio.MixtureParamsSampler method)
(pyhrf.jde.asl_physio.NoiseVarianceSampler method)
(pyhrf.jde.asl_physio.PerfBaselineSampler method)
(pyhrf.jde.asl_physio.PerfBaselineVarianceSampler method)
(pyhrf.jde.asl_physio.PhysioBOLDResponseSampler method)
(pyhrf.jde.asl_physio.PhysioPerfResponseSampler method)
(pyhrf.jde.asl_physio.ResponseLevelSampler method)
(pyhrf.jde.asl_physio.ResponseSampler method)
(pyhrf.jde.asl_physio.ResponseVarianceSampler method)
(pyhrf.jde.asl_physio_1step.DriftCoeffSampler method)
(pyhrf.jde.asl_physio_1step.DriftVarianceSampler method)
(pyhrf.jde.asl_physio_1step.LabelSampler method)
(pyhrf.jde.asl_physio_1step.MixtureParamsSampler method)
(pyhrf.jde.asl_physio_1step.NoiseVarianceSampler method)
(pyhrf.jde.asl_physio_1step.PerfBaselineSampler method)
(pyhrf.jde.asl_physio_1step.PerfBaselineVarianceSampler method)
(pyhrf.jde.asl_physio_1step.PhysioBOLDResponseSampler method)
(pyhrf.jde.asl_physio_1step.PhysioPerfResponseSampler method)
(pyhrf.jde.asl_physio_1step.ResponseLevelSampler method)
(pyhrf.jde.asl_physio_1step.ResponseSampler method)
(pyhrf.jde.asl_physio_1step.ResponseVarianceSampler method)
(pyhrf.jde.asl_physio_1step_params.DriftCoeffSampler method)
(pyhrf.jde.asl_physio_1step_params.DriftVarianceSampler method)
(pyhrf.jde.asl_physio_1step_params.LabelSampler method)
(pyhrf.jde.asl_physio_1step_params.MixtureParamsSampler method)
(pyhrf.jde.asl_physio_1step_params.NoiseVarianceSampler method)
(pyhrf.jde.asl_physio_1step_params.PerfBaselineSampler method)
(pyhrf.jde.asl_physio_1step_params.PerfBaselineVarianceSampler method)
(pyhrf.jde.asl_physio_1step_params.PhysioBOLDResponseSampler method)
(pyhrf.jde.asl_physio_1step_params.PhysioPerfResponseSampler method)
(pyhrf.jde.asl_physio_1step_params.ResponseLevelSampler method)
(pyhrf.jde.asl_physio_1step_params.ResponseSampler method)
(pyhrf.jde.asl_physio_1step_params.ResponseVarianceSampler method)
(pyhrf.jde.asl_physio_det_fwdm.DriftCoeffSampler method)
(pyhrf.jde.asl_physio_det_fwdm.DriftVarianceSampler method)
(pyhrf.jde.asl_physio_det_fwdm.LabelSampler method)
(pyhrf.jde.asl_physio_det_fwdm.MixtureParamsSampler method)
(pyhrf.jde.asl_physio_det_fwdm.NoiseVarianceSampler method)
(pyhrf.jde.asl_physio_det_fwdm.PerfBaselineSampler method)
(pyhrf.jde.asl_physio_det_fwdm.PerfBaselineVarianceSampler method)
(pyhrf.jde.asl_physio_det_fwdm.PhysioBOLDResponseSampler method)
(pyhrf.jde.asl_physio_det_fwdm.PhysioBOLDResponseVarianceSampler method)
(pyhrf.jde.asl_physio_det_fwdm.PhysioPerfResponseSampler method)
(pyhrf.jde.asl_physio_det_fwdm.PhysioPerfResponseVarianceSampler method)
(pyhrf.jde.asl_physio_det_fwdm.ResponseLevelSampler method)
(pyhrf.jde.asl_physio_det_fwdm.ResponseSampler method)
(pyhrf.jde.asl_physio_det_fwdm.ResponseVarianceSampler method)
(pyhrf.jde.asl_physio_hierarchical.DriftCoeffSampler method)
(pyhrf.jde.asl_physio_hierarchical.DriftVarianceSampler method)
(pyhrf.jde.asl_physio_hierarchical.LabelSampler method)
(pyhrf.jde.asl_physio_hierarchical.MixtureParamsSampler method)
(pyhrf.jde.asl_physio_hierarchical.NoiseVarianceSampler method)
(pyhrf.jde.asl_physio_hierarchical.PerfBaselineSampler method)
(pyhrf.jde.asl_physio_hierarchical.PerfBaselineVarianceSampler method)
(pyhrf.jde.asl_physio_hierarchical.PhysioBOLDResponseSampler method)
(pyhrf.jde.asl_physio_hierarchical.PhysioBOLDResponseVarianceSampler method)
(pyhrf.jde.asl_physio_hierarchical.PhysioPerfResponseSampler method)
(pyhrf.jde.asl_physio_hierarchical.PhysioPerfResponseVarianceSampler method)
(pyhrf.jde.asl_physio_hierarchical.PhysioTrueBOLDResponseSampler method)
(pyhrf.jde.asl_physio_hierarchical.PhysioTrueBOLDResponseVarianceSampler method)
(pyhrf.jde.asl_physio_hierarchical.ResponseLevelSampler method)
(pyhrf.jde.asl_physio_hierarchical.ResponseSampler method)
(pyhrf.jde.asl_physio_joint.DriftCoeffSampler method)
(pyhrf.jde.asl_physio_joint.DriftVarianceSampler method)
(pyhrf.jde.asl_physio_joint.LabelSampler method)
(pyhrf.jde.asl_physio_joint.MixtureParamsSampler method)
(pyhrf.jde.asl_physio_joint.NoiseVarianceSampler method)
(pyhrf.jde.asl_physio_joint.PerfBaselineSampler method)
(pyhrf.jde.asl_physio_joint.PerfBaselineVarianceSampler method)
(pyhrf.jde.asl_physio_joint.PhysioBOLDResponseSampler method)
(pyhrf.jde.asl_physio_joint.PhysioJointResponseVarianceSampler method)
(pyhrf.jde.asl_physio_joint.PhysioPerfResponseSampler method)
(pyhrf.jde.asl_physio_joint.ResponseLevelSampler method)
(pyhrf.jde.asl_physio_joint.ResponseSampler method)
(pyhrf.jde.beta.BetaSampler method)
(pyhrf.jde.drift.DriftARSampler method)
(pyhrf.jde.drift.DriftSampler method)
(pyhrf.jde.drift.DriftSamplerWithRelVar method)
(pyhrf.jde.drift.ETASampler method)
(pyhrf.jde.drift.ETASampler_MultiSess method)
(pyhrf.jde.hrf.HRFARSampler method)
(pyhrf.jde.hrf.HRFSampler method)
(pyhrf.jde.hrf.HRFSamplerWithRelVar method)
(pyhrf.jde.hrf.HRF_two_parts_Sampler method)
(pyhrf.jde.hrf.HRFwithHabSampler method)
(pyhrf.jde.hrf.RHSampler method)
(pyhrf.jde.hrf.ScaleSampler method)
(pyhrf.jde.jde_multi_sess.BiGaussMixtureParams_Multi_Sess_NRLsBar_Sampler method)
(pyhrf.jde.jde_multi_sess.Drift_MultiSess_Sampler method)
(pyhrf.jde.jde_multi_sess.ETASampler_MultiSess method)
(pyhrf.jde.jde_multi_sess.HRF_MultiSess_Sampler method)
(pyhrf.jde.jde_multi_sess.NRL_Multi_Sess_Sampler method)
(pyhrf.jde.jde_multi_sess.NRLsBar_Drift_Multi_Sess_Sampler method)
(pyhrf.jde.jde_multi_sess.NoiseVariance_Drift_Multi_Sess_Sampler method)
(pyhrf.jde.jde_multi_sess.Variance_GaussianNRL_Multi_Sess method)
(pyhrf.jde.jde_multi_sujets.Drift_MultiSubj_Sampler method)
(pyhrf.jde.jde_multi_sujets.ETASampler_MultiSubj method)
(pyhrf.jde.jde_multi_sujets.HRFVarianceSubjectSampler method)
(pyhrf.jde.jde_multi_sujets.HRF_Group_Sampler method)
(pyhrf.jde.jde_multi_sujets.HRF_Sampler method)
(pyhrf.jde.jde_multi_sujets.LabelSampler method)
(pyhrf.jde.jde_multi_sujets.MixtureParamsSampler method)
(pyhrf.jde.jde_multi_sujets.NRLs_Sampler method)
(pyhrf.jde.jde_multi_sujets.NoiseVariance_Drift_MultiSubj_Sampler method)
(pyhrf.jde.jde_multi_sujets.RHGroupSampler method)
(pyhrf.jde.jde_multi_sujets.Variance_GaussianNRL_Multi_Subj method)
(pyhrf.jde.jde_multi_sujets_alpha.AlphaVar_Sampler method)
(pyhrf.jde.jde_multi_sujets_alpha.Alpha_hgroup_Sampler method)
(pyhrf.jde.jde_multi_sujets_alpha.BiGaussMixtureParamsSampler method)
(pyhrf.jde.jde_multi_sujets_alpha.Drift_MultiSubj_Sampler method)
(pyhrf.jde.jde_multi_sujets_alpha.ETASampler_MultiSubj method)
(pyhrf.jde.jde_multi_sujets_alpha.HRFVarianceSubjectSampler method)
(pyhrf.jde.jde_multi_sujets_alpha.HRF_Group_Sampler method)
(pyhrf.jde.jde_multi_sujets_alpha.HRF_Sampler method)
(pyhrf.jde.jde_multi_sujets_alpha.LabelSampler method)
(pyhrf.jde.jde_multi_sujets_alpha.MixtureParamsSampler method)
(pyhrf.jde.jde_multi_sujets_alpha.NRLs_Sampler method)
(pyhrf.jde.jde_multi_sujets_alpha.NoiseVariance_Drift_MultiSubj_Sampler method)
(pyhrf.jde.jde_multi_sujets_alpha.RHGroupSampler method)
(pyhrf.jde.jde_multi_sujets_alpha.Variance_GaussianNRL_Multi_Subj method)
(pyhrf.jde.noise.NoiseARParamsSampler method)
(pyhrf.jde.noise.NoiseVarianceARSampler method)
(pyhrf.jde.noise.NoiseVarianceSampler method)
(pyhrf.jde.noise.NoiseVarianceSamplerWithRelVar method)
(pyhrf.jde.noise.NoiseVariance_Drift_Sampler method)
(pyhrf.jde.noise.NoiseVariancewithHabSampler method)
(pyhrf.jde.nrl.ar.NRLARSampler method)
(pyhrf.jde.nrl.bigaussian.BiGaussMixtureParamsSampler method)
(pyhrf.jde.nrl.bigaussian.BiGaussMixtureParamsSamplerWithRelVar method)
(pyhrf.jde.nrl.bigaussian.BiGaussMixtureParamsSamplerWithRelVar_OLD method)
(pyhrf.jde.nrl.bigaussian.MixtureWeightsSampler method)
(pyhrf.jde.nrl.bigaussian.NRLSampler method)
(pyhrf.jde.nrl.bigaussian.NRLSamplerWithRelVar method)
(pyhrf.jde.nrl.bigaussian.NRL_Multi_Sess_Sampler method)
(pyhrf.jde.nrl.bigaussian.Variance_GaussianNRL_Multi_Sess method)
(pyhrf.jde.nrl.bigaussian_drift.BiGaussMixtureParams_Multi_Sess_NRLsBar_Sampler method)
(pyhrf.jde.nrl.bigaussian_drift.NRL_Drift_Sampler method)
(pyhrf.jde.nrl.bigaussian_drift.NRL_Drift_SamplerWithRelVar method)
(pyhrf.jde.nrl.bigaussian_drift.NRLsBar_Drift_Multi_Sess_Sampler method)
(pyhrf.jde.nrl.gammagaussian.GamGaussMixtureParamsSampler method)
(pyhrf.jde.nrl.gammagaussian.InhomogeneousNRLSampler method)
(pyhrf.jde.nrl.habituation.NRLwithHabSampler method)
(pyhrf.jde.nrl.trigaussian.TriGaussMixtureParamsSampler method)
(pyhrf.jde.samplerbase.GibbsSamplerVariable method)
(pyhrf.jde.wsampler.WSampler method)
(pyhrf.jde.wsampler.W_Drift_Sampler method)
sampleNextInternal_bak() (pyhrf.jde.noise.NoiseVarianceSampler method)
sampleNrlsParallel() (pyhrf.jde.nrl.bigaussian.NRLSampler method)
(pyhrf.jde.nrl.habituation.NRLwithHabSampler method)
sampleNrlsParallelWithRelVar() (pyhrf.jde.nrl.bigaussian.NRLSamplerWithRelVar method)
sampleNrlsSerial() (pyhrf.jde.jde_multi_sess.NRLsBar_Drift_Multi_Sess_Sampler method)
(pyhrf.jde.nrl.bigaussian.NRLSampler method)
(pyhrf.jde.nrl.bigaussian_drift.NRL_Drift_Sampler method)
(pyhrf.jde.nrl.bigaussian_drift.NRLsBar_Drift_Multi_Sess_Sampler method)
(pyhrf.jde.nrl.habituation.NRLwithHabSampler method)
sampleNrlsSerial_bak() (pyhrf.jde.nrl.habituation.NRLwithHabSampler method)
sampleNrlsSerialWithRelVar() (pyhrf.jde.nrl.bigaussian.NRLSamplerWithRelVar method)
(pyhrf.jde.nrl.bigaussian_drift.NRL_Drift_SamplerWithRelVar method)
samplingWarmUp() (pyhrf.jde.asl.BOLDResponseLevelSampler method)
(pyhrf.jde.asl.LabelSampler method)
(pyhrf.jde.asl.ResponseLevelSampler method)
(pyhrf.jde.asl_physio.BOLDResponseLevelSampler method)
(pyhrf.jde.asl_physio.DriftCoeffSampler method)
(pyhrf.jde.asl_physio.LabelSampler method)
(pyhrf.jde.asl_physio.PhysioBOLDResponseSampler method)
(pyhrf.jde.asl_physio.PhysioPerfResponseSampler method)
(pyhrf.jde.asl_physio.ResponseLevelSampler method)
(pyhrf.jde.asl_physio_1step.BOLDResponseLevelSampler method)
(pyhrf.jde.asl_physio_1step.DriftCoeffSampler method)
(pyhrf.jde.asl_physio_1step.LabelSampler method)
(pyhrf.jde.asl_physio_1step.PhysioBOLDResponseSampler method)
(pyhrf.jde.asl_physio_1step.PhysioPerfResponseSampler method)
(pyhrf.jde.asl_physio_1step.ResponseLevelSampler method)
(pyhrf.jde.asl_physio_1step_params.BOLDResponseLevelSampler method)
(pyhrf.jde.asl_physio_1step_params.DriftCoeffSampler method)
(pyhrf.jde.asl_physio_1step_params.LabelSampler method)
(pyhrf.jde.asl_physio_1step_params.PhysioBOLDResponseSampler method)
(pyhrf.jde.asl_physio_1step_params.PhysioPerfResponseSampler method)
(pyhrf.jde.asl_physio_1step_params.ResponseLevelSampler method)
(pyhrf.jde.asl_physio_det_fwdm.BOLDResponseLevelSampler method)
(pyhrf.jde.asl_physio_det_fwdm.LabelSampler method)
(pyhrf.jde.asl_physio_det_fwdm.PhysioBOLDResponseSampler method)
(pyhrf.jde.asl_physio_det_fwdm.PhysioPerfResponseSampler method)
(pyhrf.jde.asl_physio_det_fwdm.PhysioPerfResponseVarianceSampler method)
(pyhrf.jde.asl_physio_det_fwdm.ResponseLevelSampler method)
(pyhrf.jde.asl_physio_hierarchical.BOLDResponseLevelSampler method)
(pyhrf.jde.asl_physio_hierarchical.DriftCoeffSampler method)
(pyhrf.jde.asl_physio_hierarchical.LabelSampler method)
(pyhrf.jde.asl_physio_hierarchical.PhysioBOLDResponseSampler method)
(pyhrf.jde.asl_physio_hierarchical.PhysioPerfResponseSampler method)
(pyhrf.jde.asl_physio_hierarchical.ResponseLevelSampler method)
(pyhrf.jde.asl_physio_joint.BOLDResponseLevelSampler method)
(pyhrf.jde.asl_physio_joint.DriftCoeffSampler method)
(pyhrf.jde.asl_physio_joint.LabelSampler method)
(pyhrf.jde.asl_physio_joint.PhysioBOLDResponseSampler method)
(pyhrf.jde.asl_physio_joint.PhysioPerfResponseSampler method)
(pyhrf.jde.asl_physio_joint.ResponseLevelSampler method)
(pyhrf.jde.beta.BetaSampler method)
(pyhrf.jde.drift.DriftARSampler method)
(pyhrf.jde.hrf.HRFSampler method)
(pyhrf.jde.hrf.HRF_two_parts_Sampler method)
(pyhrf.jde.jde_multi_sess.HRF_MultiSess_Sampler method)
(pyhrf.jde.jde_multi_sess.NRL_Multi_Sess_Sampler method)
(pyhrf.jde.jde_multi_sess.NRLsBar_Drift_Multi_Sess_Sampler method)
(pyhrf.jde.jde_multi_sujets.HRF_Group_Sampler method)
(pyhrf.jde.jde_multi_sujets.HRF_Sampler method)
(pyhrf.jde.jde_multi_sujets.LabelSampler method)
(pyhrf.jde.jde_multi_sujets.NRLs_Sampler method)
(pyhrf.jde.jde_multi_sujets_alpha.HRF_Group_Sampler method)
(pyhrf.jde.jde_multi_sujets_alpha.HRF_Sampler method)
(pyhrf.jde.jde_multi_sujets_alpha.LabelSampler method)
(pyhrf.jde.jde_multi_sujets_alpha.NRLs_Sampler method)
(pyhrf.jde.nrl.ar.NRLARSampler method)
(pyhrf.jde.nrl.bigaussian.NRLSampler method)
(pyhrf.jde.nrl.bigaussian.NRLSamplerWithRelVar method)
(pyhrf.jde.nrl.bigaussian.NRL_Multi_Sess_Sampler method)
(pyhrf.jde.nrl.bigaussian_drift.NRLsBar_Drift_Multi_Sess_Sampler method)
(pyhrf.jde.nrl.gammagaussian.InhomogeneousNRLSampler method)
(pyhrf.jde.nrl.habituation.NRLwithHabSampler method)
(pyhrf.jde.samplerbase.GibbsSamplerVariable method)
save() (pyhrf.core.FmriData method)
(pyhrf.ndarray.xndarray method)
save_csv() (pyhrf.paradigm.Paradigm method)
save_graph_plot() (pyhrf.tools.misc.Pipeline method)
save_parcellation_outputs() (pyhrf.validation.valid_sandbox_parcellation.ParcellationTest method)
save_simulation() (in module pyhrf.boldsynth.scenarios)
save_spm_mat_for_1st_level_glm() (pyhrf.paradigm.Paradigm method)
save_treatment() (in module pyhrf.parallel)
saveCurrentValue() (pyhrf.jde.beta.BetaSampler method)
(pyhrf.jde.jde_multi_sess.NRL_Multi_Sess_Sampler method)
(pyhrf.jde.nrl.bigaussian.NRLSampler method)
(pyhrf.jde.nrl.bigaussian.NRL_Multi_Sess_Sampler method)
(pyhrf.jde.nrl.habituation.NRLwithHabSampler method)
(pyhrf.jde.samplerbase.GibbsSamplerVariable method)
(pyhrf.jde.wsampler.WSampler method)
(pyhrf.jde.wsampler.W_Drift_Sampler method)
saveGlobalObservables() (pyhrf.jde.jde_multi_sess.BOLDGibbs_Multi_SessSampler method)
(pyhrf.jde.jde_multi_sujets.BOLDGibbs_Multi_SubjSampler method)
(pyhrf.jde.jde_multi_sujets_alpha.BOLDGibbs_Multi_SubjSampler method)
(pyhrf.jde.models.BOLDGibbsSampler method)
(pyhrf.jde.models.BOLDGibbsSampler_AR method)
(pyhrf.jde.samplerbase.GibbsSampler method)
saveObservables() (pyhrf.jde.nrl.bigaussian.NRLSampler method)
(pyhrf.jde.samplerbase.GibbsSamplerVariable method)
(pyhrf.jde.wsampler.WSampler method)
(pyhrf.jde.wsampler.W_Drift_Sampler method)
ScaleSampler (class in pyhrf.jde.hrf)
serialize_attributes() (pyhrf.xmlio.UiNode method)
sessionsScans (pyhrf.core.FmriData attribute)
set_arg_translation() (pyhrf.xmlio.Initable method)
set_attribute() (pyhrf.xmlio.UiNode method)
set_axis_domain() (pyhrf.ndarray.xndarray method)
set_cluster_labels() (in module pyhrf.boldsynth.pottsfield.swendsenwang)
set_extra_data() (pyhrf.core.FmriData method)
set_gzip_outputs() (pyhrf.ui.analyser_ui.FMRIAnalyser method)
set_init() (pyhrf.xmlio.Initable method)
(pyhrf.xmliobak.xmlbase.XMLable method)
(pyhrf.xmliobak.xmlbase.XMLable2 method)
set_init_param() (pyhrf.xmlio.Initable method)
(pyhrf.xmliobak.xmlbase.XMLable2 method)
set_init_value() (pyhrf.sandbox.stats.GSVariable method)
set_initialization() (pyhrf.sandbox.stats.GibbsSampler method)
(pyhrf.sandbox.stats.GSVariable method)
set_int_tick_labels() (in module pyhrf.plot)
set_label() (pyhrf.xmlio.UiNode method)
set_leaf() (in module pyhrf.tools.misc)
set_MRI_orientation() (pyhrf.ndarray.xndarray method)
set_nb_iterations() (pyhrf.jde.samplerbase.GibbsSampler method)
set_orientation() (pyhrf.ndarray.xndarray method)
set_outputs() (pyhrf.sandbox.stats.GSVariable method)
set_pass_errors() (pyhrf.ui.analyser_ui.FMRIAnalyser method)
set_root() (pyhrf.sandbox.data_parser.StructuredDataParser method)
set_ticks_fontsize() (in module pyhrf.plot)
set_true_value() (pyhrf.sandbox.stats.GibbsSampler method)
(pyhrf.sandbox.stats.GSVariable method)
set_true_values() (pyhrf.sandbox.stats.GibbsSampler method)
set_variable() (pyhrf.sandbox.stats.GibbsSampler method)
set_variables() (pyhrf.sandbox.stats.GibbsSampler method)
set_xticklabels() (in module pyhrf.plot)
setdefault() (pyhrf.tools.backports.OrderedDict method)
setDepths() (pyhrf.tools.misc.Pipeline method)
setDummyInputData() (pyhrf.test.commandTest.TreatmentCommandTest method)
setFieldValues() (pyhrf.boldsynth.spatialconfig.StateField method)
setFieldValues0() (pyhrf.boldsynth.spatialconfig.StateField method)
setFinalValue() (pyhrf.jde.asl.ResponseSampler method)
(pyhrf.jde.asl_physio.ResponseLevelSampler method)
(pyhrf.jde.asl_physio.ResponseSampler method)
(pyhrf.jde.asl_physio_1step.ResponseLevelSampler method)
(pyhrf.jde.asl_physio_1step.ResponseSampler method)
(pyhrf.jde.asl_physio_1step_params.ResponseLevelSampler method)
(pyhrf.jde.asl_physio_1step_params.ResponseSampler method)
(pyhrf.jde.asl_physio_det_fwdm.ResponseSampler method)
(pyhrf.jde.asl_physio_hierarchical.ResponseSampler method)
(pyhrf.jde.asl_physio_joint.ResponseSampler method)
(pyhrf.jde.hrf.HRFSampler method)
(pyhrf.jde.hrf.HRF_two_parts_Sampler method)
(pyhrf.jde.jde_multi_sess.HRF_MultiSess_Sampler method)
(pyhrf.jde.jde_multi_sess.NRLsBar_Drift_Multi_Sess_Sampler method)
(pyhrf.jde.jde_multi_sujets.HRF_Group_Sampler method)
(pyhrf.jde.jde_multi_sujets.HRF_Sampler method)
(pyhrf.jde.jde_multi_sujets_alpha.HRF_Group_Sampler method)
(pyhrf.jde.jde_multi_sujets_alpha.HRF_Sampler method)
(pyhrf.jde.samplerbase.GibbsSamplerVariable method)
setLFDMat() (pyhrf.jde.jde_multi_sess.BOLDSampler_Multi_SessInput method)
(pyhrf.jde.jde_multi_sujets.BOLDSampler_MultiSujInput method)
(pyhrf.jde.jde_multi_sujets_alpha.BOLDSampler_MultiSujInput method)
(pyhrf.jde.models.BOLDSamplerInput method)
(pyhrf.jde.models.BOLDSampler_Multi_SessInput method)
setSamplerEngine() (pyhrf.jde.samplerbase.GibbsSamplerVariable method)
setSimulationData() (pyhrf.test.commandTest.TreatmentCommandTest method)
setUp() (pyhrf.test.commandTest.MiscCommandTest method)
(pyhrf.test.commandTest.TreatmentCommandTest method)
(pyhrf.test.graphtest.GraphTest method)
(pyhrf.test.iotest.FileHandlingTest method)
(pyhrf.test.iotest.GiftiTest method)
(pyhrf.test.iotest.NiftiTest method)
(pyhrf.test.iotest.RxCopyTest method)
(pyhrf.test.iotest.SPMIOTest method)
(pyhrf.test.iotest.xndarrayIOTest method)
(pyhrf.test.jdetest.ASLPhysioTest method)
(pyhrf.test.jdetest.ASLTest method)
(pyhrf.test.jdetest.JDETest method)
(pyhrf.test.jdetest.MultiSessTest method)
(pyhrf.test.jdetest.PartitionFunctionTest method)
(pyhrf.test.statsTest.PPMTest method)
(pyhrf.test.test_glm.NipyGLMTest method)
(pyhrf.test.test_jde_multi_subj.MultiSubjTest method)
(pyhrf.test.test_jde_vem_asl.VEMASLTest method)
(pyhrf.test.test_jde_vem_bold.VEMBOLDTest method)
(pyhrf.test.test_jde_vem_tools.VEMToolsTest method)
(pyhrf.test.test_jde_vem_tools_UtilsC.VEMToolsTest method)
(pyhrf.test.test_jde_vem_tools_asl.VEMToolsTest method)
(pyhrf.test.test_ndarray.TestHtml method)
(pyhrf.test.test_ndarray.xndarrayTest method)
(pyhrf.test.test_paradigm.ParadigmTest method)
(pyhrf.test.test_parcellation.CmdParcellationTest method)
(pyhrf.test.test_parcellation.MeasureTest method)
(pyhrf.test.test_parcellation.ParcellationMethodTest method)
(pyhrf.test.test_plot.PlotCommandTest method)
(pyhrf.test.test_plot.PlotFunctionsTest method)
(pyhrf.test.test_rfir.RFIRTest method)
(pyhrf.test.test_sandbox_physio.SimulationTest method)
(pyhrf.test.test_treatment.CmdInputTest method)
(pyhrf.test.test_treatment.TreatmentTest method)
(pyhrf.test.test_xml.TestXML method)
(pyhrf.test.toolsTest.CachedEvalTest method)
(pyhrf.test.toolsTest.PipelineTest method)
(pyhrf.test.toolsTest.TableStringTest method)
(pyhrf.validation.valid_beta_estim.ObsField2DTest method)
(pyhrf.validation.valid_jde_asl.ASLTest method)
(pyhrf.validation.valid_jde_asl_physio.ASLPhysioHierarchicalTest method)
(pyhrf.validation.valid_jde_asl_physio.ASLTest method)
(pyhrf.validation.valid_jde_asl_physio_alpha.ASLTest method)
(pyhrf.validation.valid_jde_bold_mono_subj_multi_sess.MultiSessTest method)
(pyhrf.validation.valid_jde_bold_mono_subj_sess.JDETest method)
(pyhrf.validation.valid_jde_vem_asl.ASLTest method)
(pyhrf.validation.valid_rfir.RFIRTest method)
(pyhrf.validation.valid_rndm_field.PartitionFunctionTest method)
(pyhrf.validation.valid_rndm_field.PottsTest method)
(pyhrf.validation.valid_sandbox_parcellation.FeatureExtractionTest method)
(pyhrf.validation.valid_sandbox_parcellation.ParcellationTest method)
(pyhrf.validation.valid_sandbox_parcellation.StatTest method)
setupGamma() (pyhrf.jde.nrl.habituation.NRLwithHabSampler method)
setupTimeNrls() (pyhrf.jde.nrl.habituation.NRLwithHabSampler method)
setVariable() (pyhrf.tools.aexpression.ArithmeticExpression method)
simulate_asl() (in module pyhrf.jde.asl)
simulate_asl_full_physio() (in module pyhrf.sandbox.physio)
simulate_asl_phylin_prf() (in module pyhrf.sandbox.physio)
simulate_asl_physio_rfs() (in module pyhrf.sandbox.physio)
simulate_bold() (in module pyhrf.jde.models)
simulate_fmri_data() (in module pyhrf.validation.valid_sandbox_parcellation)
simulate_sessions() (in module pyhrf.jde.jde_multi_sess)
simulate_single_session() (in module pyhrf.jde.jde_multi_sess)
simulate_single_subject() (in module pyhrf.jde.jde_multi_sujets)
(in module pyhrf.jde.jde_multi_sujets_alpha)
simulate_subjects() (in module pyhrf.jde.jde_multi_sujets)
(in module pyhrf.jde.jde_multi_sujets_alpha)
(in module pyhrf.test.test_jde_multi_subj)
simulation (pyhrf.core.FmriData attribute)
simulation_save_vol_outputs() (in module pyhrf.boldsynth.scenarios)
SimulationTest (class in pyhrf.test.test_sandbox_physio)
site_taken() (pyhrf.parcellation.World method)
slow_func() (in module pyhrf.test.toolsTest)
sparsedot() (in module pyhrf.jde.nrl.habituation)
sparsedotdimun() (in module pyhrf.jde.nrl.habituation)
spatial_ward() (in module pyhrf.sandbox.parcellation)
spatial_ward_sk() (in module pyhrf.sandbox.parcellation)
spatial_ward_with_uncertainty() (in module pyhrf.sandbox.parcellation)
SpatialMapping (class in pyhrf.boldsynth.spatialconfig)
SpatialMapping2 (class in pyhrf.boldsynth.spatialconfig)
SpatialTest (class in pyhrf.test.test_parcellation)
spExtract() (pyhrf.jde.nrl.habituation.NRLwithHabSampler method)
split() (pyhrf.ndarray.xndarray method)
(pyhrf.ui.treatment.FMRITreatment method)
split_and_save() (in module pyhrf.ndarray)
split_big_parcels() (in module pyhrf.parcellation)
split_data() (pyhrf.ui.analyser_ui.FMRIAnalyser method)
split_mask_into_cc_iter() (in module pyhrf.graph)
split_parcel() (in module pyhrf.parcellation)
SPMIOTest (class in pyhrf.test.iotest)
squared_error() (in module pyhrf.sandbox.parcellation)
squeeze() (pyhrf.ndarray.xndarray method)
squeeze_all_but() (pyhrf.ndarray.xndarray method)
stack_cuboids() (in module pyhrf.ndarray)
stack_trees() (in module pyhrf.tools.misc)
start() (pyhrf.grid.DispatchedTasksManager method)
(pyhrf.grid.HierarchicalTasksManager method)
(pyhrf.grid.OneTaskManager method)
(pyhrf.grid.RepeatedTasksManager method)
StateField (class in pyhrf.boldsynth.spatialconfig)
StatTest (class in pyhrf.validation.valid_sandbox_parcellation)
std() (pyhrf.ndarray.xndarray method)
stimDurations (pyhrf.core.FmriData attribute)
stop_criterion() (pyhrf.jde.jde_multi_sess.BOLDGibbs_Multi_SessSampler method)
(pyhrf.jde.jde_multi_sujets.BOLDGibbs_Multi_SubjSampler method)
(pyhrf.jde.jde_multi_sujets_alpha.BOLDGibbs_Multi_SubjSampler method)
(pyhrf.jde.models.BOLDGibbsSampler method)
(pyhrf.jde.models.BOLDGibbsSampler_AR method)
(pyhrf.jde.samplerbase.GibbsSampler method)
(pyhrf.sandbox.stats.GibbsSampler method)
store_mask_sparse() (pyhrf.core.FmriData method)
StoreRes() (pyhrf.rfir.RFIREstim method)
string() (pyhrf.tools.message.MessageColor class method)
(pyhrf.tools.message.MessageNoColor class method)
(pyhrf.tools.message.NoMessage method)
stringDOMWriter() (pyhrf.xmliobak.xmlbase.TypedXMLHandler static method)
stringTagDOMReader() (pyhrf.xmliobak.xmlbase.TypedXMLHandler static method)
StructuredDataParser (class in pyhrf.sandbox.data_parser)
sub() (pyhrf.boldsynth.spatialconfig.NeighbourhoodSystem method)
(pyhrf.boldsynth.spatialconfig.SpatialMapping2 method)
sub_cuboid() (pyhrf.ndarray.xndarray method)
sub_cuboid_from_slices() (pyhrf.ndarray.xndarray method)
sub_graph() (in module pyhrf.graph)
subcptGamma() (in module pyhrf.jde.nrl.habituation)
substract() (pyhrf.ndarray.xndarray method)
subtractYtildeWithRelVar() (pyhrf.jde.nrl.bigaussian.NRLSamplerWithRelVar method)
sum() (pyhrf.ndarray.xndarray method)
sum_over_neighbours() (in module pyhrf.vbjde.vem_tools)
swap_layers() (in module pyhrf.tools.misc)
swapaxes() (in module pyhrf.tools.misc)
(pyhrf.ndarray.xndarray method)
SwendsenWangSampler_graph() (in module pyhrf.boldsynth.pottsfield.swendsenwang)
sys (pyhrf.tools.message.Message attribute)
T
T (class in pyhrf.test.test_xml)
TableStringTest (class in pyhrf.test.toolsTest)
Talker (class in pyhrf.parcellation)
Task (class in pyhrf.grid)
TaskHierarchical (class in pyhrf.grid)
TaskList (class in pyhrf.grid)
tasks_help() (in module pyhrf.grid)
TasksManager (class in pyhrf.grid)
TasksStarter (class in pyhrf.grid)
tearDown() (pyhrf.test.commandTest.MiscCommandTest method)
(pyhrf.test.commandTest.TreatmentCommandTest method)
(pyhrf.test.graphtest.GraphTest method)
(pyhrf.test.iotest.FileHandlingTest method)
(pyhrf.test.iotest.GiftiTest method)
(pyhrf.test.iotest.NiftiTest method)
(pyhrf.test.iotest.RxCopyTest method)
(pyhrf.test.iotest.SPMIOTest method)
(pyhrf.test.iotest.xndarrayIOTest method)
(pyhrf.test.jdetest.ASLPhysioTest method)
(pyhrf.test.jdetest.ASLTest method)
(pyhrf.test.jdetest.JDETest method)
(pyhrf.test.jdetest.MultiSessTest method)
(pyhrf.test.test_glm.NipyGLMTest method)
(pyhrf.test.test_jde_multi_subj.MultiSubjTest method)
(pyhrf.test.test_jde_vem_asl.VEMASLTest method)
(pyhrf.test.test_jde_vem_bold.VEMBOLDTest method)
(pyhrf.test.test_jde_vem_tools.VEMToolsTest method)
(pyhrf.test.test_jde_vem_tools_UtilsC.VEMToolsTest method)
(pyhrf.test.test_jde_vem_tools_asl.VEMToolsTest method)
(pyhrf.test.test_ndarray.TestHtml method)
(pyhrf.test.test_ndarray.xndarrayTest method)
(pyhrf.test.test_paradigm.ParadigmTest method)
(pyhrf.test.test_parcellation.CmdParcellationTest method)
(pyhrf.test.test_plot.PlotCommandTest method)
(pyhrf.test.test_rfir.RFIRTest method)
(pyhrf.test.test_sandbox_physio.SimulationTest method)
(pyhrf.test.test_treatment.CmdInputTest method)
(pyhrf.test.test_treatment.TreatmentTest method)
(pyhrf.test.test_xml.TestXML method)
(pyhrf.test.toolsTest.CachedEvalTest method)
(pyhrf.test.toolsTest.PipelineTest method)
(pyhrf.validation.valid_jde_asl.ASLTest method)
(pyhrf.validation.valid_jde_asl_physio.ASLPhysioHierarchicalTest method)
(pyhrf.validation.valid_jde_asl_physio.ASLTest method)
(pyhrf.validation.valid_jde_asl_physio_alpha.ASLTest method)
(pyhrf.validation.valid_jde_bold_mono_subj_multi_sess.MultiSessTest method)
(pyhrf.validation.valid_jde_bold_mono_subj_sess.JDETest method)
(pyhrf.validation.valid_jde_vem_asl.ASLTest method)
(pyhrf.validation.valid_rfir.RFIRTest method)
(pyhrf.validation.valid_sandbox_parcellation.FeatureExtractionTest method)
(pyhrf.validation.valid_sandbox_parcellation.ParcellationTest method)
test1Darray() (pyhrf.test.toolsTest.TableStringTest method)
test2Darray() (pyhrf.test.toolsTest.TableStringTest method)
test2Darray_latex() (pyhrf.test.toolsTest.TableStringTest method)
test3D() (pyhrf.test.boldsynthTest.Mapper1DTest method)
test3Darray() (pyhrf.test.toolsTest.TableStringTest method)
test4Darray() (pyhrf.test.toolsTest.TableStringTest method)
test_advanced() (pyhrf.test.iotest.RxCopyTest method)
test_all() (pyhrf.validation.valid_jde_asl.ASLTest method)
(pyhrf.validation.valid_jde_asl_physio.ASLTest method)
(pyhrf.validation.valid_jde_asl_physio_alpha.ASLTest method)
(pyhrf.validation.valid_jde_vem_asl.ASLTest method)
test_balanced_parcellation() (pyhrf.test.test_parcellation.SpatialTest method)
test_basic() (pyhrf.test.iotest.RxCopyTest method)
(pyhrf.test.test_sampler.TrajectoryTest method)
test_basic_types() (pyhrf.test.test_xml.BaseTest method)
test_beta() (pyhrf.validation.valid_jde_vem_asl.ASLTest method)
test_beta_estim_obs_fields() (in module pyhrf.validation.valid_beta_estim)
test_bfs() (pyhrf.test.graphtest.GraphTest method)
test_bijection_from_classmethod_init() (pyhrf.test.test_xml.InitableTest method)
test_bijection_from_init() (pyhrf.test.test_xml.InitableTest method)
test_bijection_from_init_no_arg() (pyhrf.test.test_xml.InitableTest method)
test_bmixt_sampler() (pyhrf.validation.valid_jde_bold_mono_subj_multi_sess.MultiSessTest method)
test_bold() (pyhrf.validation.valid_jde_vem_asl.ASLTest method)
test_bool() (pyhrf.test.test_xml.BaseTest method)
test_brf() (pyhrf.validation.valid_jde_asl.ASLTest method)
(pyhrf.validation.valid_jde_asl_physio.ASLPhysioHierarchicalTest method)
(pyhrf.validation.valid_jde_vem_asl.ASLTest method)
test_brf_basic_reg() (pyhrf.validation.valid_jde_asl_physio.ASLTest method)
(pyhrf.validation.valid_jde_asl_physio_alpha.ASLTest method)
test_brf_physio_det() (pyhrf.validation.valid_jde_asl_physio.ASLTest method)
(pyhrf.validation.valid_jde_asl_physio_alpha.ASLTest method)
test_brf_physio_nonreg() (pyhrf.validation.valid_jde_asl_physio.ASLTest method)
(pyhrf.validation.valid_jde_asl_physio_alpha.ASLTest method)
test_brf_physio_reg() (pyhrf.validation.valid_jde_asl_physio.ASLTest method)
(pyhrf.validation.valid_jde_asl_physio_alpha.ASLTest method)
test_brf_var() (pyhrf.validation.valid_jde_asl_physio.ASLTest method)
(pyhrf.validation.valid_jde_asl_physio_alpha.ASLTest method)
test_brls() (pyhrf.validation.valid_jde_asl.ASLTest method)
(pyhrf.validation.valid_jde_asl_physio.ASLTest method)
(pyhrf.validation.valid_jde_asl_physio_alpha.ASLTest method)
(pyhrf.validation.valid_jde_vem_asl.ASLTest method)
test_buildcfg_contrasts() (pyhrf.test.commandTest.TreatmentCommandTest method)
test_buildcfg_jde_loc_vol_default() (pyhrf.test.commandTest.TreatmentCommandTest method)
test_buildcfg_jde_locav_surf_default() (pyhrf.test.commandTest.TreatmentCommandTest method)
test_buildcfg_jde_locav_vol_default() (pyhrf.test.commandTest.TreatmentCommandTest method)
test_buildFiniteDiffMatrix() (pyhrf.test.test_jde_vem_tools.VEMToolsTest method)
(pyhrf.test.test_jde_vem_tools_asl.VEMToolsTest method)
test_burnin() (pyhrf.test.test_sampler.TrajectoryTest method)
test_cached() (pyhrf.test.toolsTest.PipelineTest method)
test_callback() (pyhrf.test.iotest.RxCopyTest method)
test_cartesian_apply() (pyhrf.test.toolsTest.CartesianTest method)
test_cartesian_apply_parallel() (pyhrf.test.toolsTest.CartesianTest method)
test_cartesian_eval() (pyhrf.test.test_ndarray.xndarrayTest method)
test_classmethod_init() (pyhrf.test.test_xml.InitableTest method)
test_code_digest() (pyhrf.test.toolsTest.CachedEvalTest method)
test_combine_domains() (pyhrf.test.test_ndarray.xndarrayTest method)
test_command_line() (pyhrf.test.test_glm.NipyGLMTest method)
test_comparison() (pyhrf.validation.valid_rndm_field.PartitionFunctionTest method)
test_compute_mat_X2() (pyhrf.test.test_jde_vem_tools.VEMToolsTest method)
(pyhrf.test.test_jde_vem_tools_asl.VEMToolsTest method)
test_computeFit() (pyhrf.test.test_jde_vem_tools.VEMToolsTest method)
(pyhrf.test.test_jde_vem_tools_asl.VEMToolsTest method)
test_convex_hull() (pyhrf.test.toolsTest.GeometryTest method)
test_count_homo_cliques() (pyhrf.test.boldsynthTest.FieldFuncsTest method)
test_count_homo_cliques1() (pyhrf.test.boldsynthTest.FieldFuncsTest method)
test_count_homo_cliques2() (pyhrf.test.boldsynthTest.FieldFuncsTest method)
test_create_conditions() (pyhrf.test.test_jde_vem_tools.VEMToolsTest method)
test_create_evoked_physio_signal() (pyhrf.test.test_sandbox_physio.SimulationTest method)
test_create_neighbours() (pyhrf.test.test_jde_vem_tools.VEMToolsTest method)
test_create_physio_brf() (pyhrf.test.test_sandbox_physio.SimulationTest method)
test_create_physio_prf() (pyhrf.test.test_sandbox_physio.SimulationTest method)
test_create_tbg_neural_efficacies() (pyhrf.test.test_sandbox_physio.SimulationTest method)
test_decorator_do_if_file_exist() (pyhrf.test.toolsTest.MiscTest method)
test_decorator_do_if_file_exist2() (pyhrf.test.toolsTest.MiscTest method)
test_decorator_do_if_file_exist_force() (pyhrf.test.toolsTest.MiscTest method)
test_default_jde_cmd_parallel_local() (pyhrf.test.test_treatment.TreatmentTest method)
test_default_jde_small_simulation() (pyhrf.test.jdetest.ASLPhysioTest method)
(pyhrf.test.jdetest.ASLTest method)
(pyhrf.test.jdetest.MultiSessTest method)
(pyhrf.validation.valid_jde_bold_mono_subj_multi_sess.MultiSessTest method)
test_default_treatment() (pyhrf.test.test_treatment.TreatmentTest method)
test_default_treatment_parallel_cluster() (pyhrf.test.test_treatment.TreatmentTest method)
test_default_treatment_parallel_LAN() (pyhrf.test.test_treatment.TreatmentTest method)
test_default_treatment_parallel_local() (pyhrf.test.test_treatment.TreatmentTest method)
test_distance() (pyhrf.test.toolsTest.GeometryTest method)
test_drift() (pyhrf.validation.valid_jde_asl.ASLTest method)
(pyhrf.validation.valid_jde_asl_physio.ASLTest method)
(pyhrf.validation.valid_jde_asl_physio_alpha.ASLTest method)
test_drift_and_var_sampler() (pyhrf.validation.valid_jde_bold_mono_subj_multi_sess.MultiSessTest method)
test_drift_sampler() (pyhrf.validation.valid_jde_bold_mono_subj_multi_sess.MultiSessTest method)
test_drift_var() (pyhrf.validation.valid_jde_asl_physio.ASLTest method)
(pyhrf.validation.valid_jde_asl_physio_alpha.ASLTest method)
test_drift_var_sampler() (pyhrf.validation.valid_jde_bold_mono_subj_multi_sess.MultiSessTest method)
test_dry() (pyhrf.test.iotest.RxCopyTest method)
test_duplicates_targets() (pyhrf.test.iotest.RxCopyTest method)
test_E_step() (pyhrf.validation.valid_jde_vem_asl.ASLTest method)
test_entropyA() (pyhrf.test.test_jde_vem_tools.VEMToolsTest method)
(pyhrf.test.test_jde_vem_tools_asl.VEMToolsTest method)
test_entropyH() (pyhrf.test.test_jde_vem_tools.VEMToolsTest method)
(pyhrf.test.test_jde_vem_tools_asl.VEMToolsTest method)
test_entropyZ() (pyhrf.test.test_jde_vem_tools.VEMToolsTest method)
(pyhrf.test.test_jde_vem_tools_asl.VEMToolsTest method)
test_equality() (pyhrf.test.test_ndarray.xndarrayTest method)
test_expansion() (pyhrf.test.test_ndarray.xndarrayTest method)
test_expectA() (pyhrf.test.test_jde_vem_tools.VEMToolsTest method)
(pyhrf.test.test_jde_vem_tools_UtilsC.VEMToolsTest method)
test_expectH() (pyhrf.test.test_jde_vem_tools.VEMToolsTest method)
(pyhrf.test.test_jde_vem_tools_UtilsC.VEMToolsTest method)
test_expectZ() (pyhrf.test.test_jde_vem_tools.VEMToolsTest method)
(pyhrf.test.test_jde_vem_tools_UtilsC.VEMToolsTest method)
test_explode() (pyhrf.test.test_ndarray.xndarrayTest method)
test_extrapolation() (pyhrf.validation.valid_rndm_field.PartitionFunctionTest method)
test_feature_extraction() (pyhrf.validation.valid_sandbox_parcellation.FeatureExtractionTest method)
test_fill() (pyhrf.test.test_ndarray.xndarrayTest method)
test_fir_glm() (pyhrf.test.test_glm.NipyGLMTest method)
test_flatten_and_expand() (pyhrf.test.test_ndarray.xndarrayTest method)
test_free_energy() (pyhrf.test.test_jde_vem_tools.VEMToolsTest method)
test_frmi_vol() (pyhrf.test.iotest.DataLoadTest method)
test_from_lattice1() (pyhrf.test.graphtest.GraphTest method)
test_from_lattice2() (pyhrf.test.graphtest.GraphTest method)
test_from_lattice_toro() (pyhrf.test.graphtest.GraphTest method)
test_from_lattice_toro_huge() (pyhrf.test.graphtest.GraphTest method)
test_from_mesh() (pyhrf.test.graphtest.GraphTest method)
test_from_vol_ui_default() (pyhrf.test.core_test.FMRIDataTest method)
test_full_sampler() (pyhrf.validation.valid_jde_bold_mono_subj_multi_sess.MultiSessTest method)
(pyhrf.validation.valid_jde_bold_mono_subj_sess.JDETest method)
test_func_default_args() (pyhrf.test.toolsTest.PipelineTest method)
test_generate_features() (pyhrf.validation.valid_sandbox_parcellation.FeatureExtractionTest method)
test_get_leaf() (pyhrf.test.toolsTest.treeToolsTest method)
test_gibbs() (pyhrf.validation.valid_rndm_field.PottsTest method)
test_glm_contrasts() (pyhrf.test.test_glm.NipyGLMTest method)
test_glm_default_real_data() (pyhrf.test.test_glm.NipyGLMTest method)
test_glm_with_files() (pyhrf.test.test_glm.NipyGLMTest method)
test_gls_default() (pyhrf.test.commandTest.MiscCommandTest method)
test_gls_recursive() (pyhrf.test.commandTest.MiscCommandTest method)
test_gls_recursive_group() (pyhrf.test.commandTest.MiscCommandTest method)
test_gm_cdf() (pyhrf.test.statsTest.PPMTest method)
test_gm_sample_active() (pyhrf.test.statsTest.PPMTest method)
test_gm_sample_half() (pyhrf.test.statsTest.PPMTest method)
test_gm_sample_inactive() (pyhrf.test.statsTest.PPMTest method)
test_gmm_from_forged_features() (pyhrf.validation.valid_sandbox_parcellation.ParcellationTest method)
test_gmm_known_alpha0() (pyhrf.validation.valid_sandbox_parcellation.StatTest method)
test_gmm_known_weights_difvars_noise() (pyhrf.validation.valid_sandbox_parcellation.StatTest method)
test_gmm_known_weights_difvars_noisea() (pyhrf.validation.valid_sandbox_parcellation.StatTest method)
test_gmm_known_weights_noise() (pyhrf.validation.valid_sandbox_parcellation.StatTest method)
test_gmm_known_weights_noisea() (pyhrf.validation.valid_sandbox_parcellation.StatTest method)
test_gmm_known_weights_simu_1D() (pyhrf.validation.valid_sandbox_parcellation.StatTest method)
test_gmm_likelihood() (pyhrf.validation.valid_sandbox_parcellation.StatTest method)
test_gradient() (pyhrf.test.test_jde_vem_tools.VEMToolsTest method)
test_graph_is_sane() (pyhrf.test.graphtest.GraphTest method)
test_hemodynamic_parcellation_GMM_2D_high_SNR() (pyhrf.validation.valid_sandbox_parcellation.ParcellationTest method)
test_hemodynamic_parcellation_wpu_2D_high_SNR() (pyhrf.validation.valid_sandbox_parcellation.ParcellationTest method)
test_hrf_sampler() (pyhrf.validation.valid_jde_bold_mono_subj_multi_sess.MultiSessTest method)
test_hrf_var_sampler() (pyhrf.validation.valid_jde_bold_mono_subj_multi_sess.MultiSessTest method)
(pyhrf.validation.valid_jde_bold_mono_subj_sess.JDETest method)
test_hrf_var_sampler_2() (pyhrf.validation.valid_jde_bold_mono_subj_sess.JDETest method)
test_hrf_with_var_sampler() (pyhrf.validation.valid_jde_bold_mono_subj_sess.JDETest method)
test_hrf_with_var_sampler_2() (pyhrf.validation.valid_jde_bold_mono_subj_sess.JDETest method)
test_informedGMM_parameters() (pyhrf.validation.valid_sandbox_parcellation.StatTest method)
test_init() (pyhrf.test.test_ndarray.xndarrayTest method)
(pyhrf.test.test_xml.InitableTest method)
test_intersection_matrix() (pyhrf.test.test_parcellation.MeasureTest method)
test_jde_estim_from_treatment_pck() (pyhrf.test.test_treatment.TreatmentTest method)
test_JDEMCMCAnalyzer_Uinode_bijection() (pyhrf.test.test_xml.InitableTest method)
test_JDEMCMCAnalyzerXML() (pyhrf.test.test_xml.InitableTest method)
test_jdevemanalyser() (pyhrf.test.test_jde_vem_asl.VEMASLTest method)
(pyhrf.test.test_jde_vem_bold.VEMBOLDTest method)
test_la() (pyhrf.validation.valid_jde_vem_asl.ASLTest method)
test_label_sampler() (pyhrf.validation.valid_jde_bold_mono_subj_multi_sess.MultiSessTest method)
test_labels() (pyhrf.validation.valid_jde_asl.ASLTest method)
(pyhrf.validation.valid_jde_asl_physio.ASLTest method)
(pyhrf.validation.valid_jde_asl_physio_alpha.ASLTest method)
(pyhrf.validation.valid_jde_vem_asl.ASLTest method)
test_list_of_int() (pyhrf.test.test_xml.BaseTest method)
test_list_of_misc() (pyhrf.test.test_xml.BaseTest method)
test_list_of_str() (pyhrf.test.test_xml.BaseTest method)
test_load_fmri_surf_data() (pyhrf.test.iotest.GiftiTest method)
test_load_regnames_SPM12() (pyhrf.test.iotest.SPMIOTest method)
test_load_regnames_SPM5() (pyhrf.test.iotest.SPMIOTest method)
test_load_regnames_SPM8() (pyhrf.test.iotest.SPMIOTest method)
test_matrix() (pyhrf.test.test_jde_vem_tools.VEMToolsTest method)
(pyhrf.test.test_jde_vem_tools_asl.VEMToolsTest method)
test_max_beta() (pyhrf.test.test_jde_vem_tools.VEMToolsTest method)
test_max_L() (pyhrf.test.test_jde_vem_tools.VEMToolsTest method)
(pyhrf.test.test_jde_vem_tools_UtilsC.VEMToolsTest method)
test_max_mu_sigma() (pyhrf.test.test_jde_vem_tools.VEMToolsTest method)
test_max_sigma_noise() (pyhrf.test.test_jde_vem_tools.VEMToolsTest method)
(pyhrf.test.test_jde_vem_tools_UtilsC.VEMToolsTest method)
test_max_sigmaH() (pyhrf.test.test_jde_vem_tools.VEMToolsTest method)
(pyhrf.test.test_jde_vem_tools_asl.VEMToolsTest method)
test_max_sigmaH_prior() (pyhrf.test.test_jde_vem_tools.VEMToolsTest method)
(pyhrf.test.test_jde_vem_tools_asl.VEMToolsTest method)
test_maximum() (pyhrf.test.test_jde_vem_tools.VEMToolsTest method)
(pyhrf.test.test_jde_vem_tools_asl.VEMToolsTest method)
test_MC_comp_pfmethods_ML_100x100() (pyhrf.validation.valid_beta_estim.ObsField2DTest method)
test_MC_comp_pfmethods_ML_10x10() (pyhrf.validation.valid_beta_estim.ObsField2DTest method)
test_MC_comp_pfmethods_ML_30x30() (pyhrf.validation.valid_beta_estim.ObsField2DTest method)
test_MC_comp_pfmethods_ML_3C_10x10() (pyhrf.validation.valid_beta_estim.ObsField2DTest method)
test_MC_comp_pfmethods_ML_3C_20x20() (pyhrf.validation.valid_beta_estim.ObsField2DTest method)
test_MC_comp_pfmethods_ML_3C_30x30() (pyhrf.validation.valid_beta_estim.ObsField2DTest method)
test_MC_comp_pfmethods_ML_3C_50x50() (pyhrf.validation.valid_beta_estim.ObsField2DTest method)
test_merge() (pyhrf.test.test_ndarray.xndarrayTest method)
test_merge_onsets() (pyhrf.test.test_paradigm.ParadigmTest method)
test_missing_tags_dest_basename() (pyhrf.test.iotest.RxCopyTest method)
test_missing_tags_dest_folder() (pyhrf.test.iotest.RxCopyTest method)
test_mixtdist() (pyhrf.validation.valid_sandbox_parcellation.ParcellationTest method)
test_mp() (pyhrf.validation.valid_jde_vem_asl.ASLTest method)
test_mu() (pyhrf.validation.valid_jde_asl_physio.ASLPhysioHierarchicalTest method)
test_mu_brf() (pyhrf.validation.valid_jde_asl_physio.ASLPhysioHierarchicalTest method)
test_mu_brf_prf() (pyhrf.validation.valid_jde_asl_physio.ASLPhysioHierarchicalTest method)
test_mu_prf() (pyhrf.validation.valid_jde_asl_physio.ASLPhysioHierarchicalTest method)
test_multiple_output_values() (pyhrf.test.toolsTest.PipelineTest method)
test_multisession_simu() (pyhrf.test.core_test.FMRIDataTest method)
test_noise_var() (pyhrf.validation.valid_jde_asl.ASLTest method)
(pyhrf.validation.valid_jde_asl_physio.ASLTest method)
(pyhrf.validation.valid_jde_asl_physio_alpha.ASLTest method)
(pyhrf.validation.valid_jde_vem_asl.ASLTest method)
test_noise_var_sampler() (pyhrf.validation.valid_jde_bold_mono_subj_multi_sess.MultiSessTest method)
(pyhrf.validation.valid_jde_bold_mono_subj_sess.JDETest method)
test_norm_bc() (pyhrf.validation.valid_sandbox_parcellation.StatTest method)
test_normpdf() (pyhrf.test.test_jde_vem_tools.VEMToolsTest method)
(pyhrf.test.test_jde_vem_tools_asl.VEMToolsTest method)
test_nrl_bar_only_sampler() (pyhrf.validation.valid_jde_bold_mono_subj_multi_sess.MultiSessTest method)
test_nrl_bar_sampler() (pyhrf.validation.valid_jde_bold_mono_subj_multi_sess.MultiSessTest method)
test_nrl_by_session_hrf() (pyhrf.validation.valid_jde_bold_mono_subj_multi_sess.MultiSessTest method)
test_nrl_by_session_sampler() (pyhrf.validation.valid_jde_bold_mono_subj_multi_sess.MultiSessTest method)
test_nrl_by_session_var_sampler() (pyhrf.validation.valid_jde_bold_mono_subj_multi_sess.MultiSessTest method)
test_obs_2Dfield_MAP() (pyhrf.test.analysertest.BetaEstimESTest method)
test_obs_3Dfield_MAP() (pyhrf.test.analysertest.BetaEstimESTest method)
test_obs_field_ML() (pyhrf.test.analysertest.BetaEstimESTest method)
test_onsager() (pyhrf.validation.valid_rndm_field.PartitionFunctionTest method)
test_onsager1() (pyhrf.validation.valid_rndm_field.PartitionFunctionTest method)
test_onsets_loc_av() (pyhrf.test.test_paradigm.ParadigmTest method)
test_operations() (pyhrf.test.test_ndarray.xndarrayTest method)
test_ordered_dict() (pyhrf.test.test_xml.BaseTest method)
test_paradigm_csv() (pyhrf.test.iotest.DataLoadTest method)
test_paradigm_csv2() (pyhrf.test.iotest.DataLoadTest method)
test_paradigm_csv3() (pyhrf.test.iotest.DataLoadTest method)
test_paradigm_csv4() (pyhrf.test.iotest.DataLoadTest method)
test_parallel_local() (pyhrf.test.test_treatment.TreatmentTest method)
test_parcellation() (pyhrf.test.jdetest.JDETest method)
test_parcellation_distance() (pyhrf.test.test_parcellation.MeasureTest method)
test_parcellation_history() (pyhrf.validation.valid_sandbox_parcellation.ParcellationTest method)
test_parcellation_mmp_act_level_1D() (pyhrf.validation.valid_sandbox_parcellation.ParcellationTest method)
test_parcellation_mmp_act_level_2D() (pyhrf.validation.valid_sandbox_parcellation.ParcellationTest method)
test_parcellation_spatialWard_2() (pyhrf.validation.valid_sandbox_parcellation.ParcellationTest method)
test_parcellation_spatialWard_400_nonoise() (pyhrf.validation.valid_sandbox_parcellation.ParcellationTest method)
test_parcellation_spatialWard_400_variance() (pyhrf.validation.valid_sandbox_parcellation.ParcellationTest method)
test_parcellation_spatialWard_5_sklearn() (pyhrf.validation.valid_sandbox_parcellation.ParcellationTest method)
test_parcellation_spatialWard_act_level_1D() (pyhrf.validation.valid_sandbox_parcellation.ParcellationTest method)
test_parcellation_spatialWard_act_level_2D() (pyhrf.validation.valid_sandbox_parcellation.ParcellationTest method)
test_parcellation_spatialWard_variance_1D() (pyhrf.validation.valid_sandbox_parcellation.ParcellationTest method)
test_parcellation_spatialWard_variance_2D() (pyhrf.validation.valid_sandbox_parcellation.ParcellationTest method)
test_parcels_to_graphs() (pyhrf.test.graphtest.GraphTest method)
test_path_sampling() (pyhrf.validation.valid_rndm_field.PartitionFunctionTest method)
test_perf_baseline() (pyhrf.validation.valid_jde_asl_physio.ASLTest method)
(pyhrf.validation.valid_jde_asl_physio_alpha.ASLTest method)
test_perf_baseline_var() (pyhrf.validation.valid_jde_asl_physio.ASLTest method)
(pyhrf.validation.valid_jde_asl_physio_alpha.ASLTest method)
test_perfusion() (pyhrf.validation.valid_jde_vem_asl.ASLTest method)
test_phy_integrate_euler() (pyhrf.test.test_sandbox_physio.SimulationTest method)
test_pickle_classmethod() (pyhrf.test.test_xml.InitableTest method)
test_pickle_treatment() (pyhrf.test.test_treatment.TreatmentTest method)
test_plot() (pyhrf.test.test_ndarray.TestHtml method)
test_plot_cuboid1d_as_curve() (pyhrf.test.test_plot.PlotFunctionsTest method)
test_plot_cuboid1d_as_image() (pyhrf.test.test_plot.PlotFunctionsTest method)
test_plot_cuboid2d_as_image() (pyhrf.test.test_plot.PlotFunctionsTest method)
test_plot_cuboid_as_curve() (pyhrf.test.test_plot.PlotFunctionsTest method)
test_plot_func_slice_func_only() (pyhrf.test.test_plot.PlotCommandTest method)
test_plot_func_slice_func_only_multiple_slices() (pyhrf.test.test_plot.PlotCommandTest method)
test_plot_func_slice_func_roi() (pyhrf.test.test_plot.PlotCommandTest method)
test_plot_func_slice_func_roi_anat() (pyhrf.test.test_plot.PlotCommandTest method)
test_plot_func_slice_func_roi_anat_multiple_slices() (pyhrf.test.test_plot.PlotCommandTest method)
test_polyFit() (pyhrf.test.test_jde_vem_tools.VEMToolsTest method)
(pyhrf.test.test_jde_vem_tools_asl.VEMToolsTest method)
test_PolyMat() (pyhrf.test.test_jde_vem_tools.VEMToolsTest method)
(pyhrf.test.test_jde_vem_tools_asl.VEMToolsTest method)
test_potts_gibbs() (pyhrf.test.boldsynthTest.FieldFuncsTest method)
test_ppm_a_mcmc() (pyhrf.test.statsTest.PPMTest method)
test_ppm_a_norm() (pyhrf.test.statsTest.PPMTest method)
test_ppm_g_apost() (pyhrf.test.statsTest.PPMTest method)
test_ppm_g_mcmc() (pyhrf.test.statsTest.PPMTest method)
test_ppm_g_norm() (pyhrf.test.statsTest.PPMTest method)
test_prf() (pyhrf.validation.valid_jde_asl.ASLTest method)
(pyhrf.validation.valid_jde_asl_physio.ASLPhysioHierarchicalTest method)
(pyhrf.validation.valid_jde_vem_asl.ASLTest method)
test_prf_basic_reg() (pyhrf.validation.valid_jde_asl_physio.ASLTest method)
(pyhrf.validation.valid_jde_asl_physio_alpha.ASLTest method)
test_prf_physio_det() (pyhrf.validation.valid_jde_asl_physio.ASLTest method)
(pyhrf.validation.valid_jde_asl_physio_alpha.ASLTest method)
test_prf_physio_nonreg() (pyhrf.validation.valid_jde_asl_physio.ASLTest method)
(pyhrf.validation.valid_jde_asl_physio_alpha.ASLTest method)
test_prf_physio_reg() (pyhrf.validation.valid_jde_asl_physio.ASLTest method)
(pyhrf.validation.valid_jde_asl_physio_alpha.ASLTest method)
test_prf_var() (pyhrf.validation.valid_jde_asl_physio.ASLTest method)
(pyhrf.validation.valid_jde_asl_physio_alpha.ASLTest method)
test_prls() (pyhrf.validation.valid_jde_asl.ASLTest method)
(pyhrf.validation.valid_jde_asl_physio.ASLTest method)
(pyhrf.validation.valid_jde_asl_physio_alpha.ASLTest method)
(pyhrf.validation.valid_jde_vem_asl.ASLTest method)
test_process_history_extension() (pyhrf.test.iotest.NiftiTest method)
test_pyhrf_extract_cc_vol() (pyhrf.test.graphtest.GraphTest method)
test_quick() (pyhrf.test.test_jde_multi_subj.MultiSubjTest method)
test_read_default_real_data_tiny() (pyhrf.test.iotest.GiftiTest method)
test_read_tex_gii_label() (pyhrf.test.iotest.GiftiTest method)
test_rearrange() (pyhrf.test.toolsTest.treeToolsTest method)
test_remote_dir_writable() (pyhrf.test.test_treatment.TreatmentTest method)
test_remote_map_local() (pyhrf.test.test_parallel.ParallelTest method)
test_remote_map_local_cartesian_args() (pyhrf.test.test_parallel.ParallelTest method)
test_remote_map_serial() (pyhrf.test.test_parallel.ParallelTest method)
test_render_ward_tree() (pyhrf.validation.valid_sandbox_parcellation.ParcellationTest method)
test_replacement() (pyhrf.test.iotest.RxCopyTest method)
test_results_small_simulation() (pyhrf.validation.valid_rfir.RFIRTest method)
test_rfir_on_small_simulation() (pyhrf.test.test_rfir.RFIRTest method)
(pyhrf.validation.valid_rfir.RFIRTest method)
test_save_as_gii() (pyhrf.test.test_ndarray.xndarrayTest method)
test_save_as_nii() (pyhrf.test.test_ndarray.xndarrayTest method)
test_save_nii_3D() (pyhrf.test.iotest.xndarrayIOTest method)
test_save_nii_4D() (pyhrf.test.iotest.xndarrayIOTest method)
test_save_nii_multi() (pyhrf.test.iotest.xndarrayIOTest method)
test_set_init_param() (pyhrf.test.test_xml.XMLableTest method)
test_set_leaf() (pyhrf.test.toolsTest.treeToolsTest method)
test_set_orientation() (pyhrf.test.test_ndarray.xndarrayTest method)
test_sigmaG() (pyhrf.validation.valid_jde_vem_asl.ASLTest method)
test_sigmaH() (pyhrf.validation.valid_jde_vem_asl.ASLTest method)
test_simple() (pyhrf.test.toolsTest.CachedEvalTest method)
test_simple_args() (pyhrf.test.toolsTest.CachedEvalTest method)
test_simple_bijection() (pyhrf.test.test_xml.TestXML method)
test_simulate_asl_full_physio() (pyhrf.test.test_sandbox_physio.SimulationTest method)
test_simulate_asl_full_physio_outputs() (pyhrf.test.test_sandbox_physio.SimulationTest method)
test_simulate_asl_physio_rfs() (pyhrf.test.test_sandbox_physio.SimulationTest method)
test_simulation() (pyhrf.test.jdetest.ASLTest method)
(pyhrf.validation.valid_jde_bold_mono_subj_multi_sess.MultiSessTest method)
test_single_Onsager_MAP() (pyhrf.validation.valid_beta_estim.ObsField2DTest method)
test_single_Onsager_ML() (pyhrf.validation.valid_beta_estim.ObsField2DTest method)
test_single_PFES_MAP() (pyhrf.validation.valid_beta_estim.ObsField2DTest method)
test_single_PFES_ML() (pyhrf.validation.valid_beta_estim.ObsField2DTest method)
test_single_PFPS_MAP() (pyhrf.validation.valid_beta_estim.ObsField2DTest method)
test_single_PFPS_ML() (pyhrf.validation.valid_beta_estim.ObsField2DTest method)
test_single_surface_PFPS_ML() (pyhrf.validation.valid_beta_estim.ObsField2DTest method)
test_slow_func() (pyhrf.test.toolsTest.CachedEvalTest method)
test_spatialward_against_modelbasedspatialward() (pyhrf.validation.valid_sandbox_parcellation.ParcellationTest method)
test_spatialward_against_ward_sk() (pyhrf.validation.valid_sandbox_parcellation.ParcellationTest method)
test_spatialward_from_forged_features() (pyhrf.validation.valid_sandbox_parcellation.ParcellationTest method)
test_split() (pyhrf.test.test_ndarray.xndarrayTest method)
test_split4DVol() (pyhrf.test.iotest.FileHandlingTest method)
test_split_ext() (pyhrf.test.iotest.FileHandlingTest method)
test_split_parcel() (pyhrf.test.test_parcellation.SpatialTest method)
test_split_vol_cc_2D() (pyhrf.test.graphtest.GraphTest method)
test_split_vol_cc_3D() (pyhrf.test.graphtest.GraphTest method)
test_spm12_option_parse() (pyhrf.test.test_treatment.CmdInputTest method)
test_spm5_option_parse() (pyhrf.test.test_treatment.CmdInputTest method)
test_spm8_option_parse() (pyhrf.test.test_treatment.CmdInputTest method)
test_squeeze() (pyhrf.test.test_ndarray.xndarrayTest method)
test_stack() (pyhrf.test.test_ndarray.xndarrayTest method)
test_stack_trees() (pyhrf.test.toolsTest.treeToolsTest method)
test_sub_cuboid() (pyhrf.test.test_ndarray.xndarrayTest method)
test_sub_cuboid_with_float_domain() (pyhrf.test.test_ndarray.xndarrayTest method)
test_sub_graph() (pyhrf.test.graphtest.GraphTest method)
test_sub_treatment() (pyhrf.test.test_treatment.TreatmentTest method)
test_suite() (in module pyhrf.test.jdetest)
(in module pyhrf.test.test_glm)
test_surface_treatment() (pyhrf.test.jdetest.JDETest method)
test_SW_nrj() (pyhrf.validation.valid_rndm_field.PottsTest method)
test_sw_nrj() (pyhrf.validation.valid_rndm_field.PottsTest method)
test_SW_nrj_2C_3C() (pyhrf.validation.valid_rndm_field.PottsTest method)
test_sw_sampling() (pyhrf.validation.valid_rndm_field.PottsTest method)
test_swendsenwang() (pyhrf.test.boldsynthTest.FieldFuncsTest method)
test_table_header() (pyhrf.test.test_ndarray.TestHtml method)
test_to_latex_1d() (pyhrf.test.test_ndarray.xndarrayTest method)
test_to_latex_3d() (pyhrf.test.test_ndarray.xndarrayTest method)
test_to_latex_3d_col_align() (pyhrf.test.test_ndarray.xndarrayTest method)
test_to_latex_3d_hide_name_style() (pyhrf.test.test_ndarray.xndarrayTest method)
test_to_latex_3d_inner_axes() (pyhrf.test.test_ndarray.xndarrayTest method)
test_to_latex_3d_join_style() (pyhrf.test.test_ndarray.xndarrayTest method)
test_to_nipy_Block() (pyhrf.test.test_paradigm.ParadigmTest method)
test_to_nipy_Block_2sess() (pyhrf.test.test_paradigm.ParadigmTest method)
test_to_nipy_ER() (pyhrf.test.test_paradigm.ParadigmTest method)
test_to_nipy_ER_2sess() (pyhrf.test.test_paradigm.ParadigmTest method)
test_to_spm_mat_1st_level() (pyhrf.test.test_paradigm.ParadigmTest method)
test_TreatmentXML() (pyhrf.test.test_xml.InitableTest method)
test_tree_to_xndarray() (pyhrf.test.test_ndarray.xndarrayTest method)
test_tuple_of_misc() (pyhrf.test.test_xml.BaseTest method)
test_txt_1d_col_axes_only() (pyhrf.test.test_ndarray.TestHtml method)
test_txt_1d_row_axes_only() (pyhrf.test.test_ndarray.TestHtml method)
test_txt_tooltip() (pyhrf.test.test_ndarray.TestHtml method)
test_unstack_2D() (pyhrf.test.test_ndarray.xndarrayTest method)
test_unstack_empty_inner_axes() (pyhrf.test.test_ndarray.xndarrayTest method)
test_uspatialward_formula() (pyhrf.validation.valid_sandbox_parcellation.ParcellationTest method)
test_uward_tree_save() (pyhrf.validation.valid_sandbox_parcellation.ParcellationTest method)
test_var_tracking() (pyhrf.test.test_sampler.GibbsTest method)
test_vem_bold_constrained() (pyhrf.test.test_jde_vem_bold.VEMBOLDTest method)
test_vem_bold_constrained_python() (pyhrf.test.test_jde_vem_bold.VEMBOLDTest method)
test_voronoi_parcellation() (pyhrf.test.test_parcellation.SpatialTest method)
test_voronoi_with_seeds() (pyhrf.test.test_parcellation.CmdParcellationTest method)
test_walk_branches() (pyhrf.test.toolsTest.treeToolsTest method)
test_ward_distance_1D_v1() (pyhrf.validation.valid_sandbox_parcellation.ParcellationTest method)
test_ward_distance_1D_v2() (pyhrf.validation.valid_sandbox_parcellation.ParcellationTest method)
test_ward_distance_2D() (pyhrf.validation.valid_sandbox_parcellation.ParcellationTest method)
test_ward_spatial_cmd() (pyhrf.test.test_parcellation.CmdParcellationTest method)
test_ward_spatial_real_data() (pyhrf.test.test_parcellation.CmdParcellationTest method)
test_ward_spatial_scikit() (pyhrf.test.test_parcellation.ParcellationMethodTest method)
test_ward_spatial_scikit_with_mask() (pyhrf.test.test_parcellation.ParcellationMethodTest method)
test_ward_tree_save() (pyhrf.validation.valid_sandbox_parcellation.ParcellationTest method)
test_with_subfolders() (pyhrf.test.iotest.RxCopyTest method)
test_WNSGGMS() (pyhrf.test.commandTest.TreatmentCommandTest method)
test_WNSGGMS_surf_cmd() (pyhrf.test.commandTest.TreatmentCommandTest method)
test_wpu_from_forged_features() (pyhrf.validation.valid_sandbox_parcellation.ParcellationTest method)
test_write_tex_gii_2D_float() (pyhrf.test.iotest.GiftiTest method)
test_write_tex_gii_float() (pyhrf.test.iotest.GiftiTest method)
test_write_tex_gii_labels() (pyhrf.test.iotest.GiftiTest method)
test_write_tex_gii_time_series() (pyhrf.test.iotest.GiftiTest method)
test_xmapping() (pyhrf.test.test_ndarray.xndarrayTest method)
test_xmapping_inconsistent_domain() (pyhrf.test.test_ndarray.xndarrayTest method)
test_xmapping_inconsistent_mapping_value() (pyhrf.test.test_ndarray.xndarrayTest method)
test_xml_from_classmethod_init() (pyhrf.test.test_xml.InitableTest method)
test_xml_from_init() (pyhrf.test.test_xml.InitableTest method)
testAll2D() (pyhrf.test.toolsTest.DiagBlockTest method)
testBadDepTreeInit() (pyhrf.test.toolsTest.PipelineTest method)
testBasic() (pyhrf.test.toolsTest.CropTest method)
(pyhrf.test.toolsTest.DictToStringTest method)
testCartesianBasic() (pyhrf.test.toolsTest.CartesianTest method)
testDefaultWithOutputs() (pyhrf.test.jdetest.JDETest method)
testDetectEstimDefault() (pyhrf.test.commandTest.TreatmentCommandTest method)
testDynamicParamsHierachic() (pyhrf.test.test_xml.XMLableTest method)
testDynamicParamsSingleClass() (pyhrf.test.test_xml.XMLableTest method)
testExtrapolation2C() (pyhrf.test.jdetest.PartitionFunctionTest method)
testFrom1D() (pyhrf.test.toolsTest.DiagBlockTest method)
testFromNdarray() (pyhrf.test.toolsTest.DiagBlockTest method)
testGoodDepTreeInit() (pyhrf.test.toolsTest.PipelineTest method)
testHrfEstim() (pyhrf.test.commandTest.TreatmentCommandTest method)
TestHtml (class in pyhrf.test.test_ndarray)
testIncompleteMapping() (pyhrf.test.boldsynthTest.Mapper1DTest method)
testIrregularMapping() (pyhrf.test.boldsynthTest.Mapper1DTest method)
testLargerTargetGrid() (pyhrf.test.toolsTest.ResampleTest method)
testNumpy() (pyhrf.test.test_xml.BaseTest method)
testOnHierachicDict() (pyhrf.test.toolsTest.DictToStringTest method)
testOnNumpyArray() (pyhrf.test.toolsTest.DictToStringTest method)
testOnSpmMat() (pyhrf.test.toolsTest.DictToStringTest method)
testPeel() (pyhrf.test.toolsTest.PeelVolumeTest method)
testRepFrom1D() (pyhrf.test.toolsTest.DiagBlockTest method)
testRepFrom2D() (pyhrf.test.toolsTest.DiagBlockTest method)
testRepFromBlocks() (pyhrf.test.toolsTest.DiagBlockTest method)
testRepr() (pyhrf.test.toolsTest.PipelineTest method)
testResampleToGrid() (pyhrf.test.toolsTest.ResampleTest method)
testSimple() (pyhrf.test.statsTest.RPNormTest method)
TestXML (class in pyhrf.test.test_xml)
THE_ROOT (pyhrf.tools.misc.Pipeline attribute)
threshold_labels() (in module pyhrf.stats.misc)
threshold_W() (pyhrf.jde.wsampler.W_Drift_Sampler method)
(pyhrf.jde.wsampler.WSampler method)
ThresholdPPM() (pyhrf.jde.nrl.bigaussian.NRLSampler method)
time_diff_str() (in module pyhrf.tools.misc)
TimeSlot (class in pyhrf.grid)
timeslot_help() (in module pyhrf.grid)
TimeSlotList (class in pyhrf.grid)
to_conquer() (pyhrf.parcellation.Ant method)
to_cuboid() (pyhrf.jde.samplerbase.Trajectory method)
(pyhrf.sandbox.stats.Trajectory method)
to_dict() (pyhrf.core.FMRISessionSimulationData method)
(pyhrf.core.FMRISessionSurfacicData method)
(pyhrf.core.FMRISessionVolumicData method)
to_html_table() (pyhrf.ndarray.xndarray method)
to_latex() (pyhrf.ndarray.xndarray method)
to_nipy_paradigm() (pyhrf.paradigm.Paradigm method)
to_patrol() (pyhrf.parcellation.Ant method)
to_tree() (pyhrf.ndarray.xndarray method)
to_ui_node() (pyhrf.xmlio.Initable method)
to_xml() (in module pyhrf.xmlio)
(in module pyhrf.xmliobak.xmlbase)
(pyhrf.xmlio.UiNode method)
TopClass (class in pyhrf.test.test_xml)
tr (pyhrf.core.FmriData attribute)
track_obs_quantity() (pyhrf.jde.samplerbase.GibbsSamplerVariable method)
(pyhrf.sandbox.stats.GSVariable method)
(pyhrf.sandbox.stats.GibbsSampler method)
track_sampled_quantity() (pyhrf.jde.samplerbase.GibbsSamplerVariable method)
(pyhrf.sandbox.stats.GSVariable method)
(pyhrf.sandbox.stats.GibbsSampler method)
Trajectory (class in pyhrf.jde.samplerbase)
(class in pyhrf.sandbox.stats)
TrajectoryTest (class in pyhrf.test.test_sampler)
TreatmentCommandTest (class in pyhrf.test.commandTest)
TreatmentTest (class in pyhrf.test.test_treatment)
tree() (in module pyhrf.tools.misc)
tree_items() (in module pyhrf.tools.misc)
tree_leaves() (in module pyhrf.tools.misc)
tree_rearrange() (in module pyhrf.tools.misc)
tree_to_xndarray() (in module pyhrf.ndarray)
treeBranches() (in module pyhrf.tools.misc)
treeBranchesClasses() (in module pyhrf.tools.misc)
treeToolsTest (class in pyhrf.test.toolsTest)
TriGaussMixtureParamsSampler (class in pyhrf.jde.nrl.trigaussian)
truncRandn() (in module pyhrf.stats.random)
tty_check() (pyhrf.tools.misc.AnsiColorizer method)
tupleDOMWriter() (pyhrf.xmliobak.xmlbase.TypedXMLHandler static method)
tupleTagDOMReader() (pyhrf.xmliobak.xmlbase.TypedXMLHandler static method)
type_info() (pyhrf.xmlio.UiNode method)
TYPE_LABEL_ARRAY (pyhrf.xmliobak.xmlbase.TypedXMLHandler attribute)
TYPE_LABEL_BOOL (pyhrf.xmliobak.xmlbase.TypedXMLHandler attribute)
TYPE_LABEL_CELL (pyhrf.xmliobak.xmlmatlab.MatlabXMLHandler attribute)
TYPE_LABEL_DICT (pyhrf.xmliobak.xmlbase.TypedXMLHandler attribute)
TYPE_LABEL_DOUBLE (pyhrf.xmliobak.xmlmatlab.MatlabXMLHandler attribute)
TYPE_LABEL_FLOAT (pyhrf.xmliobak.xmlbase.TypedXMLHandler attribute)
TYPE_LABEL_INT (pyhrf.xmliobak.xmlbase.TypedXMLHandler attribute)
TYPE_LABEL_KEY_VAL_PAIR (pyhrf.xmliobak.xmlbase.TypedXMLHandler attribute)
TYPE_LABEL_LIST (pyhrf.xmliobak.xmlbase.TypedXMLHandler attribute)
TYPE_LABEL_NONE (pyhrf.xmliobak.xmlbase.TypedXMLHandler attribute)
TYPE_LABEL_ODICT (pyhrf.xmliobak.xmlbase.TypedXMLHandler attribute)
TYPE_LABEL_STRING (pyhrf.xmliobak.xmlbase.TypedXMLHandler attribute)
TYPE_LABEL_TUPLE (pyhrf.xmliobak.xmlbase.TypedXMLHandler attribute)
TYPE_LABEL_XML_INCLUDE (pyhrf.xmliobak.xmlbase.TypedXMLHandler attribute)
TypedXMLHandler (class in pyhrf.xmliobak.xmlbase)
U
UiNode (class in pyhrf.xmlio)
UnboundSpatialMapping (class in pyhrf.boldsynth.spatialconfig)
undrift() (in module pyhrf.tools.misc)
unformat_nrl_file() (in module pyhrf.sandbox.data_parser)
UniformGenerator (class in pyhrf.stats.random)
unknown_host_status (pyhrf.grid.HostsManager attribute)
unknown_status (pyhrf.grid.HostsManager attribute)
unprotect_xml_attr() (in module pyhrf.xmlio)
unserialize_attributes (pyhrf.xmlio.UiNode attribute)
unstack() (pyhrf.ndarray.xndarray method)
unstack_trees() (in module pyhrf.tools.misc)
update() (pyhrf.sandbox.stats.Trajectory method)
(pyhrf.tools.backports.OrderedDict method)
update_all() (pyhrf.tools.misc.Pipeline method)
update_all_hosts() (pyhrf.grid.HostsManager method)
update_host_status() (pyhrf.grid.HostsManager method)
update_observables() (pyhrf.sandbox.stats.GSVariable method)
update_quantity() (pyhrf.tools.misc.Pipeline method)
update_subgraph() (pyhrf.tools.misc.Pipeline method)
updateClassCounts() (pyhrf.boldsynth.spatialconfig.StateField method)
updateGammaTimeNRLs() (pyhrf.jde.nrl.habituation.NRLwithHabSampler method)
updateGlobalObservables() (pyhrf.jde.jde_multi_sess.BOLDGibbs_Multi_SessSampler method)
(pyhrf.jde.jde_multi_sujets.BOLDGibbs_Multi_SubjSampler method)
(pyhrf.jde.jde_multi_sujets_alpha.BOLDGibbs_Multi_SubjSampler method)
(pyhrf.jde.models.BOLDGibbsSampler method)
(pyhrf.jde.models.BOLDGibbsSampler_AR method)
(pyhrf.jde.samplerbase.GibbsSampler method)
updateNorm() (pyhrf.jde.asl.DriftCoeffSampler method)
(pyhrf.jde.asl.ResponseSampler method)
(pyhrf.jde.asl_physio.DriftCoeffSampler method)
(pyhrf.jde.asl_physio.ResponseSampler method)
(pyhrf.jde.asl_physio_1step.DriftCoeffSampler method)
(pyhrf.jde.asl_physio_1step.ResponseSampler method)
(pyhrf.jde.asl_physio_1step_params.DriftCoeffSampler method)
(pyhrf.jde.asl_physio_1step_params.ResponseSampler method)
(pyhrf.jde.asl_physio_det_fwdm.DriftCoeffSampler method)
(pyhrf.jde.asl_physio_det_fwdm.ResponseSampler method)
(pyhrf.jde.asl_physio_hierarchical.DriftCoeffSampler method)
(pyhrf.jde.asl_physio_hierarchical.ResponseSampler method)
(pyhrf.jde.asl_physio_joint.DriftCoeffSampler method)
(pyhrf.jde.asl_physio_joint.ResponseSampler method)
(pyhrf.jde.drift.DriftARSampler method)
(pyhrf.jde.drift.DriftSampler method)
(pyhrf.jde.drift.DriftSamplerWithRelVar method)
(pyhrf.jde.hrf.HRFSampler method)
(pyhrf.jde.hrf.HRF_two_parts_Sampler method)
(pyhrf.jde.hrf.HRFwithHabSampler method)
(pyhrf.jde.jde_multi_sess.Drift_MultiSess_Sampler method)
(pyhrf.jde.jde_multi_sess.HRF_MultiSess_Sampler method)
(pyhrf.jde.jde_multi_sujets.Drift_MultiSubj_Sampler method)
(pyhrf.jde.jde_multi_sujets.HRF_Group_Sampler method)
(pyhrf.jde.jde_multi_sujets.HRF_Sampler method)
(pyhrf.jde.jde_multi_sujets_alpha.Drift_MultiSubj_Sampler method)
(pyhrf.jde.jde_multi_sujets_alpha.HRF_Group_Sampler method)
(pyhrf.jde.jde_multi_sujets_alpha.HRF_Sampler method)
updateObsersables() (pyhrf.jde.asl.ResponseLevelSampler method)
(pyhrf.jde.hrf.HRFSampler method)
(pyhrf.jde.hrf.HRF_two_parts_Sampler method)
(pyhrf.jde.jde_multi_sess.BiGaussMixtureParams_Multi_Sess_NRLsBar_Sampler method)
(pyhrf.jde.jde_multi_sess.HRF_MultiSess_Sampler method)
(pyhrf.jde.jde_multi_sujets.HRF_Group_Sampler method)
(pyhrf.jde.jde_multi_sujets.HRF_Sampler method)
(pyhrf.jde.jde_multi_sujets_alpha.BiGaussMixtureParamsSampler method)
(pyhrf.jde.jde_multi_sujets_alpha.HRF_Group_Sampler method)
(pyhrf.jde.jde_multi_sujets_alpha.HRF_Sampler method)
(pyhrf.jde.nrl.bigaussian.BiGaussMixtureParamsSampler method)
(pyhrf.jde.nrl.bigaussian.NRLSampler method)
(pyhrf.jde.nrl.bigaussian_drift.BiGaussMixtureParams_Multi_Sess_NRLsBar_Sampler method)
(pyhrf.jde.nrl.habituation.NRLwithHabSampler method)
(pyhrf.jde.samplerbase.GibbsSamplerVariable method)
(pyhrf.jde.wsampler.WSampler method)
(pyhrf.jde.wsampler.W_Drift_Sampler method)
updateParameters() (pyhrf.xmliobak.xmlbase.XMLParamDrivenClass method)
updateVarYmDrift() (pyhrf.jde.drift.DriftARSampler method)
updateXh() (pyhrf.jde.hrf.HRF_two_parts_Sampler method)
(pyhrf.jde.hrf.HRFSampler method)
(pyhrf.jde.jde_multi_sess.HRF_MultiSess_Sampler method)
(pyhrf.jde.jde_multi_sujets.HRF_Sampler method)
(pyhrf.jde.jde_multi_sujets_alpha.HRF_Sampler method)
(pyhrf.jde.nrl.habituation.NRLwithHabSampler method)
updateXResp() (pyhrf.jde.asl.ResponseSampler method)
(pyhrf.jde.asl_physio.ResponseSampler method)
(pyhrf.jde.asl_physio_1step.ResponseSampler method)
(pyhrf.jde.asl_physio_1step_params.ResponseSampler method)
(pyhrf.jde.asl_physio_det_fwdm.ResponseSampler method)
(pyhrf.jde.asl_physio_hierarchical.ResponseSampler method)
(pyhrf.jde.asl_physio_joint.ResponseSampler method)
updateYtilde() (pyhrf.jde.nrl.habituation.NRLwithHabSampler method)
User (class in pyhrf.grid)
V
VAL_INI (pyhrf.jde.jde_multi_sujets_alpha.HRFVarianceSubjectSampler attribute)
(pyhrf.jde.jde_multi_sujets_alpha.RHGroupSampler attribute)
values() (pyhrf.tools.backports.OrderedDict method)
var() (pyhrf.ndarray.xndarray method)
variables (pyhrf.tools.aexpression.ArithmeticExpression attribute)
VariableTypeException
Variance_GaussianNRL_Multi_Sess (class in pyhrf.jde.jde_multi_sess)
(class in pyhrf.jde.nrl.bigaussian)
Variance_GaussianNRL_Multi_Subj (class in pyhrf.jde.jde_multi_sujets)
(class in pyhrf.jde.jde_multi_sujets_alpha)
VEMASLTest (class in pyhrf.test.test_jde_vem_asl)
VEMBOLDTest (class in pyhrf.test.test_jde_vem_bold)
VEMToolsTest (class in pyhrf.test.test_jde_vem_tools)
(class in pyhrf.test.test_jde_vem_tools_UtilsC)
(class in pyhrf.test.test_jde_vem_tools_asl)
Verbose (class in pyhrf)
verbose() (pyhrf.parcellation.Talker method)
verbose_array() (pyhrf.parcellation.Talker method)
viewitems() (pyhrf.tools.backports.OrderedDict method)
viewkeys() (pyhrf.tools.backports.OrderedDict method)
viewvalues() (pyhrf.tools.backports.OrderedDict method)
Visit_graph_noeud() (in module pyhrf.parcellation)
W
W_BOLDGibbsSampler (class in pyhrf.jde.models)
W_Drift_BOLDGibbsSampler (class in pyhrf.jde.models)
W_Drift_Sampler (class in pyhrf.jde.wsampler)
wait_for_end_or_cmd() (pyhrf.grid.DispatchedTasksManager method)
wait_to_be_ready() (pyhrf.grid.TasksManager method)
walkCluster() (in module pyhrf.boldsynth.pottsfield.swendsenwang)
Ward (class in pyhrf.sandbox.parcellation)
ward_tree() (in module pyhrf.sandbox.parcellation)
ward_tree_save() (in module pyhrf.sandbox.parcellation)
WardAgglomeration (class in pyhrf.sandbox.parcellation)
warning() (pyhrf.tools.message.MessageColor class method)
(pyhrf.tools.message.MessageNoColor class method)
(pyhrf.tools.message.NoMessage method)
WN_BiG_ASLSamplerInput (class in pyhrf.jde.asl)
(class in pyhrf.jde.asl_physio)
(class in pyhrf.jde.asl_physio_1step)
(class in pyhrf.jde.asl_physio_1step_params)
(class in pyhrf.jde.asl_physio_det_fwdm)
(class in pyhrf.jde.asl_physio_hierarchical)
(class in pyhrf.jde.asl_physio_joint)
WN_BiG_BOLDSamplerInput (class in pyhrf.jde.models)
WN_BiG_Drift_BOLDSamplerInput (class in pyhrf.jde.models)
World (class in pyhrf.parcellation)
write() (pyhrf.tools.message.MessageColor class method)
(pyhrf.tools.message.NoMessage method)
write_configuration() (in module pyhrf.configuration)
write_list() (pyhrf.tools.message.MessageColor class method)
(pyhrf.tools.message.NoMessage method)
write_xml() (in module pyhrf.xmlio)
(in module pyhrf.xmliobak.xmlbase)
writeDOMData() (pyhrf.xmliobak.xmlbase.TypedXMLHandler method)
WSampler (class in pyhrf.jde.wsampler)
X
XMLable (class in pyhrf.xmliobak.xmlbase)
XMLable2 (class in pyhrf.xmliobak.xmlbase)
XMLableTest (class in pyhrf.test.test_xml)
xmlComment (pyhrf.ui.treatment.FMRITreatment attribute)
XmlInitable (in module pyhrf.xmlio)
XMLParamDrivenClass (class in pyhrf.xmliobak.xmlbase)
XMLParamDrivenClassInitException (class in pyhrf.xmliobak.xmlbase)
xndarray (class in pyhrf.ndarray)
xndarray_like() (in module pyhrf.ndarray)
(pyhrf.ndarray.xndarray static method)
xndarrayIOTest (class in pyhrf.test.iotest)
xndarrayMapper1D (class in pyhrf.boldsynth.spatialconfig)
xndarrayTest (class in pyhrf.test.test_ndarray)
Z
Z_Entropy() (in module pyhrf.vbjde.vem_tools)
ZeroGenerator (class in pyhrf.stats.random)